Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0386
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42143| Best HMM Match : JmjC (HMM E-Value=0.015)                    28   8.0  
SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)             28   8.0  

>SB_42143| Best HMM Match : JmjC (HMM E-Value=0.015)
          Length = 352

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 166 YKVNIKQNIDKLTISRYMADVTS 234
           YKV  K NID++  S Y+ D+TS
Sbjct: 78  YKVGKKYNIDQIPFSGYVQDLTS 100


>SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)
          Length = 355

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 721 RTFISSLGALTNMKVIWNGGFPLNPN*LVSVR 816
           RT + S+ + T+  +I NGG PLN +   SVR
Sbjct: 320 RTQVVSIASSTSPPLILNGGIPLNTSRSYSVR 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,973,287
Number of Sequences: 59808
Number of extensions: 340681
Number of successful extensions: 644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)