Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0385
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    31   0.13 
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   8.8  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    25   8.8  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    25   8.8  

>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = -2

Query: 240 HLEPPDAVHHPLEGNAFDQFILSVDPLHPQDVVAEVQRLEPPLLPQESDDGAAGPMETLA 61
           +L P D  HHP++     +  L V      + V  V R+    L ++  D       +  
Sbjct: 55  NLRPKDKYHHPVQARVQSRNDLLVTIKKMDNSVQNVSRIRQVFLFRDMADFQYSTQNSPF 114

Query: 60  EQFLDGKLGVADRNAVQE 7
            Q LD  L V D NA+ +
Sbjct: 115 VQKLDSTLRVLDYNAINK 132


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -2

Query: 534 IKLQIASQTCTQRPQFFSGSLTA-PFRPSAPIRGRYHPLWERLI*VIKKNGIFVEFWSRG 358
           + L++      +R   FSGS +  P RPS  +  +  P W R +         + F S  
Sbjct: 621 VNLEVTLPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRL------AAAIGFSS-- 672

Query: 357 GSVERKRRLRGREAAH 310
           GS E+K  +   +A H
Sbjct: 673 GSPEKKHVITSSDAGH 688


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 522 IASQTCTQRPQFFSGSLTAPFRPSAPIR 439
           +AS+TC+  P     +L AP    APIR
Sbjct: 276 VASETCSSDPNNPKLNLKAPVFSEAPIR 303


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 587 LQGLYSERAQSVSKSPSR*NYKLPPKPVHSAPN 489
           L G+ + + QS + S +    KLPP P +  PN
Sbjct: 104 LPGVPAPQKQSEASSVNSSTEKLPPPPSYPGPN 136


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -3

Query: 320 KQRTCSTPAASSADSCLDSTPKICEFSTWNRLMRSTIRLRGMPLTSSSFPSTLCTLR 150
           +QR  STP  S  +S L S+P I   S+  +   S+++  G+   +SS  ++L + R
Sbjct: 372 EQRFLSTPLGSFDESILGSSP-INRLSSSFKQYTSSLKSPGLSTRTSSTMNSLNSSR 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,718
Number of Sequences: 5004
Number of extensions: 49185
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)