Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0385
(619 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26124| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 1e-21
SB_46404| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39) 31 0.57
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37) 31 0.75
SB_49989| Best HMM Match : GRP (HMM E-Value=2.3) 30 1.3
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66) 28 5.3
SB_58936| Best HMM Match : GBP (HMM E-Value=2.2e-05) 28 5.3
SB_29725| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15) 27 9.2
SB_21215| Best HMM Match : DUF1279 (HMM E-Value=0.54) 27 9.2
SB_256| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_26124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 99 bits (238), Expect = 1e-21
Identities = 42/66 (63%), Positives = 52/66 (78%)
Frame = +1
Query: 1 LQFLYCIPVGDTQFTVEELFGEGLHWAGCTIIALLGQQRRFEALDFCYHILRVQRVDGKD 180
+QF C P+ + TVEE FGEGL+WAGC +IALL QQRRFEALDFCYHI++V VD +D
Sbjct: 62 IQFNVCQPLRPGELTVEECFGEGLNWAGCVVIALLNQQRRFEALDFCYHIIKVHEVDSRD 121
Query: 181 ELVKGI 198
E+V G+
Sbjct: 122 EVVAGV 127
>SB_46404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 139 CYHILRVQRVDGKDELVKGIPLKRMVDRIRRFQVLNSQIFGVLS 270
C L+ Q+ + K ++ P MV+R R+F++ +Q+FG++S
Sbjct: 352 CNSNLQSQKEESKSKMPFYAPDPEMVERARKFKLKETQMFGIMS 395
>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
Length = 401
Score = 31.5 bits (68), Expect = 0.57
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = -2
Query: 393 KNGIFVEFWSRGGSVERKRRLRGREAAHVLDAGRVVRGQLP--GQ--HAEDLRVQHLEPP 226
K G+++ +RGG ++ + LRG E+ HV AG V P G+ A+ ++ P
Sbjct: 89 KKGVYILNVARGGIIDEEALLRGLESGHVGGAGLDVFVTEPPTGKLTKAKCALYDLVQVP 148
Query: 225 DAVHHP 208
D V HP
Sbjct: 149 DLVKHP 154
>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
Length = 1219
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 365 RAAAQLSVSGACGGGKQRTCSTPAASSADSCLDSTPKIC 249
R +LS C GGK+ +C S L +TP +C
Sbjct: 942 RGGKRLSCDARCRGGKRLSCDARCRGKQGSVLRATPALC 980
>SB_49989| Best HMM Match : GRP (HMM E-Value=2.3)
Length = 181
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 63 RGSPLGRLHHHRSPGAAEEVRGAGLLLPHPEGAEGRRKG*TG 188
RGS + HH S A + RG+G H G+ G++ G TG
Sbjct: 135 RGSGQAKQHHRESGQAKQHYRGSGQAKQHHRGS-GQQTGITG 175
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 63 RGSPLGRLHHHRSPGAAEEVRGAGLLLPHPEGAEGRRKG*TGQRHSPQADGGPHQA 230
RGS + HH S A + RG+G H G+ ++ G + Q G QA
Sbjct: 75 RGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQA 130
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 63 RGSPLGRLHHHRSPGAAEEVRGAGLLLPHPEGAEGRRKG*TGQRHSPQADGGPHQA 230
RGS + HH S A + RG+G H G+ ++ G + Q G QA
Sbjct: 85 RGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQA 140
>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = -2
Query: 273 PGQHAEDLRVQHLEPPDAVHHPLEGNAFDQFILSVDPLHPQDVVAEVQR-LEPPLLPQES 97
PG++ + L++ + L + F Q + S DP ++ + +++R + + P
Sbjct: 591 PGKNGKMLKMSEAIDDMVAYCKLSDHVFYQILHSTDPQLQKEEIPDIRREIIDAIPPDVL 650
Query: 96 DDGAAGPMETLAEQFLDGKLGVADRNAVQELQ 1
G A + + + G+ DRN + EL+
Sbjct: 651 GGGRAIDSDDVIIHLISFDYGMKDRNPIDELR 682
>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 185 WSKAFPSSGWWTASGGSKC*TRRSSACCPGSC 280
W P+S + SKC + S+ CPGSC
Sbjct: 478 WCSGNPASKCFAVQESSKCLSGWSTGTCPGSC 509
>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
Length = 264
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = -2
Query: 285 RGQLPGQHAEDLRVQHLEPPDAVHHPLEGNAFDQFILSVDPLHPQDVVAEVQRLEP--PL 112
R Q P + E R Q P H PLE + ++P PQ+ ++ P P
Sbjct: 121 RPQEPHRPLEPPRPQEQHRPQEPHRPLEPTRPQESHRPLEPPRPQEQHRPLESHRPLEPT 180
Query: 111 LPQES 97
PQES
Sbjct: 181 RPQES 185
>SB_58936| Best HMM Match : GBP (HMM E-Value=2.2e-05)
Length = 480
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 127 ALDFCYHILRVQRVDGKDELVKGIPLKRMVDR 222
++DF Y + R+ V KDE++K P R+V R
Sbjct: 171 SIDFLYRMSRLSDVIFKDEVIKNYPRLRVVLR 202
>SB_29725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 439 GALSPTLGKADLSNKKKWNF 380
GALS G AD +K+WNF
Sbjct: 60 GALSNDNGNADADGRKQWNF 79
>SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)
Length = 355
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 565 ELSRCLRVLLDKITNCLPNLYTAP-PIFFWV 476
E SRC ++++ +TN L L+ +P PI F++
Sbjct: 269 ETSRCAQLIVTGVTNKLDELWISPNPILFFL 299
>SB_21215| Best HMM Match : DUF1279 (HMM E-Value=0.54)
Length = 756
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 117 PLLPQESDDGAAGPMETLAEQFLDGKLGVADRNAVQ 10
PL+P + DDG + PM + + + G+A RNA Q
Sbjct: 28 PLIPFDPDDGESIPMTSTSSR-THAAHGMATRNATQ 62
>SB_256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 218 STIRLRGMPLTSSSFPSTLCTLRMW 144
S ++L G +SS F L TLRMW
Sbjct: 65 SELQLEGRKASSSQFLKVLSTLRMW 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,654,825
Number of Sequences: 59808
Number of extensions: 413423
Number of successful extensions: 1595
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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