Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0385
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18410.1 68418.m02166 expressed protein similar to p53 induci...    54   8e-08
At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein S...    29   3.3  
At4g11530.1 68417.m01850 protein kinase family protein contains ...    28   4.3  
At2g39880.1 68415.m04901 myb family transcription factor (MYB25)...    28   4.3  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    27   7.5  
At1g72280.1 68414.m08356 endoplasmic reticulum oxidoreductin 1 (...    27   7.5  
At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ...    27   10.0 
At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family pr...    27   10.0 

>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
            protein [Homo sapiens] GI:5616320
          Length = 1234

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 25/57 (43%), Positives = 31/57 (54%)
 Frame = +1

Query: 1    LQFLYCIPVGDTQFTVEELFGEGLHWAGCTIIALLGQQRRFEALDFCYHILRVQRVD 171
            LQ  Y   +   Q    E+ G+ + W GCTII LLGQQ  FE  DF Y +L V  V+
Sbjct: 1097 LQIGYLEEITAPQSAQHEVLGDSIAWGGCTIIYLLGQQLHFELFDFSYQVLNVSEVE 1153


>At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein
           SPATULA (SPT) identical to SPATULA (SPT) GI:11245493
           from [Arabidopsis thaliana]
          Length = 373

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 276 LPGQHAEDLRVQHLEPPDAVHHPLEGNAFDQFILSVDPLHPQDVVAEVQRLEPPL 112
           LPG     L++  + PP+A + PL  N  +QF  + +     + VA    LEP +
Sbjct: 266 LPGTTLHPLQLSQIRPPEATNDPLL-NHTNQFASTSNAPEMINTVASSYALEPSI 319


>At4g11530.1 68417.m01850 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 931

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 368 GRAAAQLSVSGAC-GGGKQRTCSTPAASSADSCLDSTPKICEFSTW 234
           G+A  ++ ++G C  G K  TCS     ++D   +S P   +  TW
Sbjct: 327 GQAPNRVFINGMCIPGTKPETCSDCIKGASDKISESCPNKTDAYTW 372


>At2g39880.1 68415.m04901 myb family transcription factor (MYB25)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 367

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 356 AQLSVSGACGGGKQRTCSTPAASSADSCLDSTPKICEFSTWNRLMR 219
           A+L+ S A GGGK +    P     D  L    K+C    WN + R
Sbjct: 34  AELAKSDANGGGKSKV-KGPWLPEQDEALTRLVKMCGPRNWNLISR 78


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to DCL
           protein, chloroplast precursor (Defective chloroplasts
           and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
           esculentum]
          Length = 839

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +2

Query: 173 ERMNW---SKAFPSSGWWTASGGS 235
           ER  W   +K FPSSG W+  GG+
Sbjct: 539 ERSQWGNPAKKFPSSGGWSNGGGA 562


>At1g72280.1 68414.m08356 endoplasmic reticulum oxidoreductin 1
           (ERO1) family protein contains Pfam domain, PF04137:
           Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
          Length = 469

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 276 LPGQHAEDLRVQHLEPPDAVHHPLEGNAFDQFILSVDP-LHPQDV-VAEVQRLEPPLLPQ 103
           +PG  ++DL+ Q  +P  AV   ++  AF  ++ + +P  H  D    E+  +   L P 
Sbjct: 141 VPGLPSDDLKCQEGKPQGAVDRTIDNRAFRGWVETKNPWTHDDDTDSGEMSYVNLQLNP- 199

Query: 102 ESDDGAAGP 76
           E   G  GP
Sbjct: 200 ERYTGYTGP 208


>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 908

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
 Frame = -2

Query: 375 EFWSRGGSVERKRRLRGREAAHVLDAGRVV--RGQLPGQHAEDLRVQHLEPPDAV--HHP 208
           +FW R  SV     L       VLD  RV    G+LP      + +++L    AV  H P
Sbjct: 563 DFWIRSASVFHNLTL-----LRVLDLSRVKFEGGKLPSSIGGLIHLRYLSLYGAVVSHLP 617

Query: 207 LEGNAFDQFI---LSVD---PLHPQDVVAEVQRLEPPLLPQESDD 91
                    +   L VD   P+H  +V+ E+  L    LPQE DD
Sbjct: 618 STMRNLKLLLFLNLRVDNKEPIHVPNVLKEMLELRYLSLPQEMDD 662


>At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 811

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
 Frame = +3

Query: 48  RGTVRRGSPLGRLHHHRSPGAAEEVRGAGLLLPHPEGAEGRRKG*TGQRHSPQADG---- 215
           RG+V  G      HHHRSP A   V       P  +  E   +      +S  A G    
Sbjct: 425 RGSVENGQT-SENHHHRSPSATSTVSNEE--FPRADANENSEESAHATPYSSDASGEIRS 481

Query: 216 GPHQAVPSA 242
           GP  A  SA
Sbjct: 482 GPLAATTSA 490


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,829,134
Number of Sequences: 28952
Number of extensions: 293212
Number of successful extensions: 932
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)