Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0383
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    29   0.46 
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    28   0.80 
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   3.2  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.5  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.9  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 116 ALLLHG*NRQSGGTYLCGLTRGPTTSIFFYHTFKG*WGQLRYDFY 250
           AL   G  R +GG     L  GP   I F    +G + Q  YDFY
Sbjct: 150 ALYAKGNARPTGGAGCVALLVGPNAPIVFEPGLRGTYMQHAYDFY 194


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 332 PKLWVSSPLQLLSCP 288
           PKL +S PLQ LSCP
Sbjct: 409 PKLGISKPLQTLSCP 423


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 25  GRRAHSPPGVKWLLEPIDIYN---VNVPPFKPKRITASRLK*AEWW 153
           G   H P  V WLL P DIY+   VNV       +T   +   +WW
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYSGRKVNVQIETQSELTMG-MSVVDWW 278


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 112 KRITASRLK*AEWWYLPV-RTHKRTYHQYFFLSHV 213
           K ++  R+  +E + LP  R H  T + Y+F+SH+
Sbjct: 2   KVVSLRRIYSSEIYKLPTTRLHMDTLYYYYFVSHL 36


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 125 LHG*NRQSGGTYLCGLTRGPTTSIFFYHTFK 217
           LHG  R+ GG Y  GL+      +  + T++
Sbjct: 848 LHGEIREKGGAYGAGLSYSGIDGVLSFFTYR 878


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,770
Number of Sequences: 5004
Number of extensions: 40647
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)