Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0383
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.7  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.4  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 371 YKSATYEANCLKTVSIFYVSI 433
           + SAT+  +  K VS+FY ++
Sbjct: 140 HPSATFSLDLNKVVSVFYTAV 160


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +2

Query: 353 NYKTIYY----KSATYEANCLKTVSIFYVSI 433
           +Y T+++     SAT+  +  K VS+FY ++
Sbjct: 129 SYGTLFFIYVQPSATFSLDLNKVVSVFYTAV 159


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 344 RLTRPKLWVSSPLQLLSCPPGDE 276
           R T+ ++W+    Q L C  GDE
Sbjct: 415 RQTQTEVWIPKWRQFLYCLAGDE 437


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 2   FFFFLLIWVDELTAHLV 52
           FF FLL W    T  L+
Sbjct: 288 FFLFLLAWTPYATVALI 304


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 304 NSLAVHQETSPRQVFNESIEIIS*LSPLAFERVIKKNTGG--RSSCESAQVGTTT 146
           N++   ++T P +  N    + S L+P    +  +KNT G  RS   S+   T T
Sbjct: 316 NTIYRRKKTVPLKKVNSKYILKSTLTPKLARKQFQKNTTGLERSRSWSSLDNTNT 370


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 224 TSL*TCDKKKYWW 186
           TSL + DKK+Y W
Sbjct: 378 TSLVSLDKKQYTW 390


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 156 PTCADSQEDLPPVFFFITR 212
           P CA++ ++ PP+  F  R
Sbjct: 409 PMCAEAFQEFPPLGRFAVR 427


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 2   FFFFLLIWVDELTAHLV 52
           FF FLL W    T  L+
Sbjct: 288 FFLFLLAWTPYATVALI 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,526
Number of Sequences: 438
Number of extensions: 2925
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)