Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0382
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.99 
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.7  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   5.3  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    25   5.3  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    25   7.0  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   7.0  
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo...    25   7.0  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   9.2  

>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 74  LSRTGSRQIRTNDDSFDASEVLSNERL---LKSYTKCLLN 184
           LS   SR   TND   D+  VL  ER+   L+ Y K +LN
Sbjct: 250 LSPLPSRSSDTNDPQSDSQHVLRQERMRIELRQYIKNILN 289


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 80  RTGSRQIRTNDDSFDASEVLS 142
           + G RQ+ ++DDSFD   +LS
Sbjct: 4   KDGKRQLMSDDDSFDTISILS 24


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = +2

Query: 146 ERLLKSY---TKCLLNQGPCTAELKKIKDKIPEAL--ETHCAKCTDKQKQMAKQLAQGIK 310
           ERL+KS     KC LN       + ++  K P     ++      + +K++   L + ++
Sbjct: 433 ERLVKSQGDLVKCFLN---IQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDL-ENVE 488

Query: 311 KTHPELWDEFITFYDPQGKYQ 373
           +T  EL D  I FYD  G YQ
Sbjct: 489 ET--ELTDSPIYFYDTLGNYQ 507


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 222 IKFQKLWRPIVRNVLINRSRWRNNLRKELRRHTRSYGTSSLLFTTLKE 365
           I FQ L R +VR  + +++      RK++ +     GTS  LF ++ E
Sbjct: 88  INFQLLVRNVVRYAICSQTSHNTITRKDIVQKAFPEGTSRNLFQSVFE 135


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 21/83 (25%), Positives = 41/83 (49%)
 Frame = +2

Query: 92  RQIRTNDDSFDASEVLSNERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDK 271
           +Q      S  + + LSN++  +      LN+   T EL+ IK+   + +ETHCA     
Sbjct: 261 KQNTKEQKSGSSQDDLSNQQKQQLDFMDSLNKKLST-ELESIKEASRKEMETHCATIQTL 319

Query: 272 QKQMAKQLAQGIKKTHPELWDEF 340
           + ++ +  A+ +K+    L ++F
Sbjct: 320 ENEVKE--ARKVKEESLTLANKF 340


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 221 DKIPEALETHCAKCTDKQKQMAKQL-AQGIKKTHPELWDEF 340
           DKI +++E H +K    Q++  +QL  +  +K +P++  +F
Sbjct: 90  DKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSSQF 130


>SPBC8D2.12c |||mitochondrial DNA binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 249 IVRNVLINRSRWRNNLRKELRRHTRSYGTSSLLFT 353
           IV  V  NR+R  ++++  LR H  S  T   LF+
Sbjct: 128 IVEAVTDNRARAASSIKHILRNHGASLSTVKFLFS 162


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 176 LLNQGPCTAELKKIKDKIPEALE 244
           +L QG CT ++ + K+KI + LE
Sbjct: 307 VLIQGSCTEKILRFKEKILDLLE 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,467
Number of Sequences: 5004
Number of extensions: 39790
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)