Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0381
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.70 
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    27   3.8  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = -1

Query: 317 YKLTYYYYNFILIFKIYRVWTEYNSNKKKLSMQVPSNVXXXXXXXXXXFKASQGMLRS 144
           Y L     N++++FK   ++ E N N ++   Q+P N            + +QG L +
Sbjct: 418 YSLLNVLANYVVVFKDRLIFQEINQNWEEHKGQIPENFIFSLLKMFGEMQENQGFLNA 475


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = -1

Query: 329 RQKFYKLTYYYYNFILIFKIYRVWTEYNSNKKKLSMQVPSNV 204
           RQ F+++ Y Y+   + + I   W + N +    +++ P  +
Sbjct: 264 RQTFWRILYVYFGISISYGITVAWNDPNLSSGSKTLKSPMTI 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,258
Number of Sequences: 5004
Number of extensions: 50740
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)