Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0381
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger) fa...    29   4.3  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    28   5.7  
At1g79910.1 68414.m09336 expressed protein contains Pfam profile...    28   7.6  

>At1g69330.1 68414.m07954 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 270

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 586 VLRN*SADIVRHFDSSSNDILYFFFFSKLIEFYL 485
           +LRN S D++ H D S+      F F K ++F++
Sbjct: 175 LLRNQSTDLLPHHDHSNQPSRQLFSFHKSLDFFI 208


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 302 YYYNFILIFKIYRVWTEYNSNKKKLSMQVPSN 207
           YY N++  FK+   W E   NKK  S     N
Sbjct: 372 YYNNYMSNFKLEHAWRELRHNKKWCSTYTSEN 403


>At1g79910.1 68414.m09336 expressed protein contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 381

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +1

Query: 472 NVVDINKTQL-ILKKKKNTKCRYSKN 546
           ++V I KT++  +K+KKN+ C+Y KN
Sbjct: 16  SLVKITKTRVDTVKRKKNSVCKYLKN 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,187,801
Number of Sequences: 28952
Number of extensions: 227469
Number of successful extensions: 351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)