Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0380
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49490.1 68416.m05409 expressed protein                             29   2.6  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    29   4.6  

>At3g49490.1 68416.m05409 expressed protein
          Length = 953

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 181 GIYPNEKSHAFFIKTPAVM*FSEPREIKSLPQLFSITATHLSKWNALLLRDIIGCIFT 8
           G Y + +S + F+  P    FSE + +   P   S T   +S +  +L+R+     FT
Sbjct: 116 GFYSSRESSSDFVSLPPTENFSERQRLNFEPTYSSATLAPVSSYADMLIRNSQDSFFT 173


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 169 NEKSHAFFIKT-PAVM*FSEPREIKSLPQLFSITATHLSKWNALL 38
           NEK+H+ F+K    ++   E   I+ LPQ   I ATH    + L+
Sbjct: 136 NEKAHSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDILI 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,520
Number of Sequences: 28952
Number of extensions: 280185
Number of successful extensions: 514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)