Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0379
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   1.7  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   2.3  

>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 382 PKIFLNFIKRLTLSKVNNNLISSKSTIMKAINKSI 278
           P + LN++  L  S  NN LIS   ++++ + KS+
Sbjct: 510 PYVALNYLLELEKSPKNNLLISMDESVIEIVQKSL 544


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 406 TLYLLYLIPKIFLNFIKRLTLSKVNNNLISSK 311
           T+YLL  IPK+   ++  L+ S + +N IS +
Sbjct: 349 TIYLLLFIPKLEAKYLNNLSKSLMFSNAISCR 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,151
Number of Sequences: 5004
Number of extensions: 46502
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)