Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0379
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7632| Best HMM Match : Hin1 (HMM E-Value=4.7)                       31   1.4  
SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27)                 28   7.4  

>SB_7632| Best HMM Match : Hin1 (HMM E-Value=4.7)
          Length = 158

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = -1

Query: 448 NQTFTNNILIKYIWTLYLLYLIPKIFLNFIKRLTLSKVNNNLISSKSTIMKAINKSIEPF 269
           N    NNI+I  I  + ++ +I  I +  I ++    +NN  I+S +  +   +K+++ F
Sbjct: 21  NNIIINNIIIIIINNIIIIIIINNIIIIIIIKIINITINNITINSNNNNININSKTVKNF 80

Query: 268 *KYV 257
            K++
Sbjct: 81  RKFL 84


>SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27)
          Length = 745

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 662 KQFKLHIITITILEKIKYVIAFVTGKLRIEIFFFLIHVI 546
           ++F L ++T  +L+K+ +    V+GK       +++HVI
Sbjct: 186 EEFTLKLLTADVLDKLDFKQFSVSGKSTTHALVYMLHVI 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,692,047
Number of Sequences: 59808
Number of extensions: 288939
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)