Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0379
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64760.1 68418.m08143 26S proteasome regulatory subunit, puta...    28   8.0  
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ...    28   8.0  

>At5g64760.1 68418.m08143 26S proteasome regulatory subunit,
           putative (RPN5)
          Length = 442

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 4   ISHIIVLISKVYSRIAFVHSLTIFVLTSAMFHNETKE*HFNRVFFFKYIVSR 159
           I H I+++SK YSRI F     +  LT+     E  E H + +   K ++++
Sbjct: 342 IEHNILVVSKYYSRITFKRLAELLCLTT-----EEAEKHLSEMVVSKALIAK 388


>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
           proton pump, putative similar to P-type
           H(+)-transporting ATPase from [Phaseolus vulgaris]
           GI:758250, [Lycopersicon esculentum] GI:1621440,
           SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
           tuberosum] GI:435001; contains InterPro accession
           IPR001757: ATPase, E1-E2 type
          Length = 949

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 412 IWTLYLLYLIPKIFLNFIKRLTLS-KVNNNLISSKS 308
           IW   ++  IP   L FI R TLS K  NN+I +++
Sbjct: 825 IWIYSIVTYIPLDILKFITRYTLSGKAWNNMIENRT 860


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,542,745
Number of Sequences: 28952
Number of extensions: 209919
Number of successful extensions: 402
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)