Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0378
         (782 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    26   0.39 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.4  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 432 VTTTYNSMEPAARTKKHESLRRSI*GLKCKRERA 331
           + TT N +E AA TK+    RRS   +  KR RA
Sbjct: 15  IPTTNNQIEMAAATKRVSDNRRSNKPIMEKRRRA 48


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 437 KISSYFKRKLHSARSNSSGSDGYKPYCKHPKL 532
           +I  Y +RK    R     S G +P C  P++
Sbjct: 231 EIDMYMRRKCQECRLKKCLSVGMRPECVVPEV 262


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 579  EANCLKTVSIFYVSI*SL 526
            E NCLK   I+YV++ S+
Sbjct: 998  EFNCLKYGVIYYVTVPSM 1015


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 579  EANCLKTVSIFYVSI*SL 526
            E NCLK   I+YV++ S+
Sbjct: 998  EFNCLKYGVIYYVTVPSM 1015


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,305
Number of Sequences: 336
Number of extensions: 3747
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)