Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0378
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    28   1.3  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.3  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    26   5.3  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   9.3  

>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 636 PKLWVSSPLQLLSCP 680
           PKL +S PLQ LSCP
Sbjct: 409 PKLGISKPLQTLSCP 423


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 167 FLLKNETIPSVFSYDVVTFNYR 102
           FL+  +T+PS FS+ +VT N++
Sbjct: 271 FLVSFQTLPSFFSFPLVTDNWQ 292


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 300 AHRHIGTSTIIPLILHVFVKYEVQ 229
           AHRH+ T +   L+L++F  YE+Q
Sbjct: 122 AHRHVNTGSDSELLLNIFA-YELQ 144


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 344 SESAQRATKRHNRPPHIATSAHRQ 273
           + +++ AT + +RPP IA++ HR+
Sbjct: 549 TRNSKPATPKASRPPSIASTVHRR 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,754
Number of Sequences: 5004
Number of extensions: 59597
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)