Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0378
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)                     30   2.4  
SB_2018| Best HMM Match : AIRC (HMM E-Value=5.1)                       28   7.4  

>SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)
          Length = 1094

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = +3

Query: 261 LKVLLSMCRCGDVRRPIVPLCRSLRALACISSLKWNASMIHVFS--C-VQPAPSNYKSLS 431
           + V+   CR G+V R IVPL    + +A   SL  N S+I V S  C V+    ++    
Sbjct: 750 ISVVSGGCR-GEVCRVIVPLYLLFQMVATWRSLSCNRSLIFVVSGGCRVEKVVVDHLEAQ 808

Query: 432 RQK*AHISNESFTQLVQT 485
           R   AHI   +F  ++QT
Sbjct: 809 R---AHIKQLTFDYMLQT 823


>SB_2018| Best HMM Match : AIRC (HMM E-Value=5.1)
          Length = 298

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 271 YCRCADVAMCGGRLCLFVARCALSLAFQALN 363
           +C    VAM GGR  + V RC+ S  +Q LN
Sbjct: 6   WCPAGRVAM-GGRAAIVVIRCSRSRLYQLLN 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,039,597
Number of Sequences: 59808
Number of extensions: 422456
Number of successful extensions: 933
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)