Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0377
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.44 
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    27   3.1  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    26   5.4  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.4  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   5.4  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   9.4  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.4  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    25   9.4  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = -1

Query: 325 VTLFMCLQLMYYFIKSFFPFKFQRFQIPKFNYVVLFLYEENCCYFNHYLLLQYINSYLQF 146
           ++LF CL L ++F+  F  F F       F++ + FL +    YF+ + +L ++  +  F
Sbjct: 110 LSLFRCLLLFFFFLLFFLSFSF------SFSF-LFFLSQIFIVYFSSFPILHFL--FFFF 160

Query: 145 LQIL*FQSHFDFFFSKISFPSLSI 74
           L +  F S   F FS     SL+I
Sbjct: 161 LCVCVFLS---FLFSLSHLLSLAI 181


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 325 VTLFMCLQLMYYFIKSFFPFKFQRFQIPKFNYV 227
           V +F  + ++YY + SFF F+ Q   + K+ YV
Sbjct: 140 VPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYV 172


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 265 KFQRFQIPKFNYVVLFLYEENCCYFNHYLLLQYINSYLQFLQI 137
           K +  ++ +FNY +  LY+     FN ++ L+  ++Y+  L I
Sbjct: 192 KIEDMEVEEFNYYITTLYQPR--IFNDFIALRDASNYMIRLSI 232


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -1

Query: 334 CLLVTLFMCLQLMYYFIKSFFPFKFQRFQIPKFNYVVLFLYEENCC-YFNHYLLLQYINS 158
           CL V L + L      + S FP +F    +P F Y++L  + +    YF  ++ L Y + 
Sbjct: 470 CLPVCLILILANNE--LHSPFPAEFYVL-LPSF-YILLNSFNQKLMEYFKGFVKLDYFSI 525

Query: 157 YLQFLQIL*FQSH 119
           ++ FL +  F S+
Sbjct: 526 FITFLHVCSFGSN 538


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 188 VKITTIFLIQKKHHIIEFGDLKPLELKWEEAFNKIIHQ 301
           + I  +  I  K   + F  LKPL LKW   +   IHQ
Sbjct: 727 IPIQHVLNILVKDGTLNFCFLKPLLLKWMNDYETRIHQ 764


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 672 PVKSLESNSLSPLDMMTFINSLERSKSYVK*ICFILAHLASAENFA 535
           PV S+    +   D+M     LE++K Y   +CF +     AE+ A
Sbjct: 857 PVASVNIGPVYKKDVMRCATMLEKAKEYALMLCFDVKVDRDAEDLA 902


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 12   LALGYIAYMRQKYESMGYYSAIDKDGKEIFEKKKSKWD*NYRICKNCK 155
            L+LG   + R   +S+GY   + +  K++  + K ++D N+     CK
Sbjct: 907  LSLGDSQFHRLSCDSVGYNIEVKRYVKKVSGQGKMRYDYNFWSKNECK 954


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 364 SCITNVGFSNPSKSAKN 414
           S + N  FSNPSKS+KN
Sbjct: 196 SPLRNHNFSNPSKSSKN 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,842
Number of Sequences: 5004
Number of extensions: 57928
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)