Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0377
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13250.1 68414.m01538 glycosyl transferase family 8 protein c...    31   0.88 
At1g79975.2 68414.m09353 expressed protein                             30   2.0  
At1g79975.1 68414.m09352 expressed protein                             30   2.0  
At4g13490.1 68417.m02105 zinc finger (C3HC4-type RING finger) fa...    28   8.2  
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    28   8.2  

>At1g13250.1 68414.m01538 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 Glycosyl transferase
           family 8
          Length = 345

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 182 IMVKITTIFLIQKKHHIIEFGDLKPLELKWEEAFNKIIHQLQAH 313
           + VK+ T   IQK+H I E G L P  L +      + H+   H
Sbjct: 241 VTVKLETWMRIQKRHRIYELGSLPPFLLVFAGDVEPVEHRWNQH 284


>At1g79975.2 68414.m09353 expressed protein
          Length = 152

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 331 LLVTLFMCLQLMYYFIKSFFPFKFQRFQIPKFNYVVLFLY 212
           L+V   +CLQ  YY     F   F   ++P+ + V  F Y
Sbjct: 12  LIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDY 51


>At1g79975.1 68414.m09352 expressed protein
          Length = 152

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 331 LLVTLFMCLQLMYYFIKSFFPFKFQRFQIPKFNYVVLFLY 212
           L+V   +CLQ  YY     F   F   ++P+ + V  F Y
Sbjct: 12  LIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDY 51


>At4g13490.1 68417.m02105 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 226

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 738 NIKLK-KFICYTIFAKS*TLIGFPVKSLESNSLSPLDMMT 622
           NIK K +  C     K   L   PV  LE + +SPLDM+T
Sbjct: 57  NIKNKMECPCCRQIEKGKWLFAEPVDQLEEDDMSPLDMLT 96


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -1

Query: 310 CLQLMYYFIKSFFPFKFQRFQIPKFNYVVLFLYEENCCYFN 188
           C+Q+    IK +    +   ++P F   V+  +  NCC ++
Sbjct: 857 CVQIFIKLIKDWCAEPYSEEKVPGFQNFVIEAFATNCCLYS 897


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,458
Number of Sequences: 28952
Number of extensions: 267188
Number of successful extensions: 515
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)