Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0376
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   3.2  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    25   5.6  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   9.8  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc...    25   9.8  

>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 340 STPTANGGRSTKTALRPRASSSLNKTS 420
           STPT    R+T+T  RP A+++ +  S
Sbjct: 151 STPTTTTARTTRTTPRPTATTNTSNQS 177


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 303 NELEIWKELTAHFDPDGKWRKKYE 374
           N  +IW+EL   +   G W+ +YE
Sbjct: 96  NTFQIWQELYGSYVWQGYWQPEYE 119


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 132 SPKFLAS*FCHICQCTYHQQVRP 64
           SP  LAS + H   CT  Q++ P
Sbjct: 649 SPYLLASGYSHRLDCTLSQRIEP 671


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +1

Query: 91  LTNMTKLTCKKFWRTRGSWSRIWIACSARAS 183
           L   T+ +C   +   G+W  IW   S +++
Sbjct: 68  LPEKTRFSCSPIYIKEGNWHYIWTCTSLKSN 98


>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 211

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 288 DYLIKNELEIWKELTAHFDPDGKWRKK 368
           D ++K EL     +  H D DGK+  K
Sbjct: 180 DQIVKRELATGVPIVYHLDKDGKYVSK 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,985
Number of Sequences: 5004
Number of extensions: 36554
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)