Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0376
(553 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 34 0.067
SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20) 31 0.83
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) 30 1.1
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 30 1.4
SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06) 29 3.3
SB_34783| Best HMM Match : Gam (HMM E-Value=0.24) 28 4.4
SB_21873| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_12797| Best HMM Match : HECT (HMM E-Value=0) 28 4.4
SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07) 28 5.8
SB_41682| Best HMM Match : PX (HMM E-Value=3.9) 27 7.7
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 34.3 bits (75), Expect = 0.067
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +3
Query: 189 PEGKELKDHLQEALETGCEKCTEAQEKGAETSIDYLIKNELEIWKELTAHFDPDGKW 359
PE L H E GC C ++ + ++ LE W LTA+FD DG W
Sbjct: 165 PENARLNSHCTETSRGGC--CVFPFIYKDKSYTECTTEDSLEPWCALTANFDVDGMW 219
>SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)
Length = 610
Score = 30.7 bits (66), Expect = 0.83
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 120 EILENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALETGCEKCTEAQEK 269
+I +L+ES+M V+ + CT EGKE+ Q+ L + E +EK
Sbjct: 390 DIRTKSQLIESHMRAVVVRRHCTKEGKEI-GFFQQGLPLRHDLICEEEEK 438
>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
Length = 311
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 81 DKYTDKYDKINLQEILENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALETGCEKCTEA 260
++ K +++N I + KR E GKG T +GK + +EA+E G E C +
Sbjct: 113 ERVNKKKERLNKGSIEQGKRATEQ------GKG-ATEQGKGATEQGKEAIEQGKEACEQE 165
Query: 261 QEK 269
+E+
Sbjct: 166 RER 168
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 29.9 bits (64), Expect = 1.4
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = +3
Query: 84 KYTDKYDKINLQEIL---ENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALETGCEKCT 254
K D + KI+ Q I ENK L + D K K E KE+K L+EA
Sbjct: 1377 KIEDDHKKIHQQNIERDHENKMLSKRVADLTALKEKFEHEKKEMKQSLREA--------- 1427
Query: 255 EAQEKGAETSIDYLIKNELEIWKELTAHFDPDGKWRKKY 371
+ +E E +Y +K ++ + ++L + R+K+
Sbjct: 1428 QGRESDLEVRYEYEVKEKVALQQQLDDTTNRSNADREKF 1466
>SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06)
Length = 617
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 180 KCTPEGKELKDHLQEALETGCEKCTEAQEKGAETSIDYLIKNELEIWKELTAHFDPDG 353
K TP G+ LKD Q ++ KCT + + + + L K L I+ H G
Sbjct: 329 KSTPSGRYLKDFRQSTDQSRRPKCTRVKTTTSGSEM-RLTKRHLHIYDACPTHIGGSG 385
>SB_34783| Best HMM Match : Gam (HMM E-Value=0.24)
Length = 347
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +3
Query: 111 NLQEILEN-KRLLESYMDC---VLGKGKCTPEGKELKDHLQEALETGCEKCTEAQ 263
N Q+ LE+ +++LE ++ V+ + E + L+D +EA TGC KC+ A+
Sbjct: 122 NSQKRLESHEKVLEEHLKEMLEVIAHMQMREEKRYLRDMSREAATTGCVKCSSAR 176
>SB_21873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +3
Query: 114 LQEILENKRLLESYMDCVLGKG-KCTPEGKEL--KDHLQEALETGCE 245
+QEI+ + +L+E DC+L + + PEG +L + ++ +A+ C+
Sbjct: 229 MQEIISSSQLMEYLGDCILAQAPERLPEGAQLNYEQNMHDAIGIMCK 275
>SB_12797| Best HMM Match : HECT (HMM E-Value=0)
Length = 749
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 162 CVLGKGKCTPEGKELKDHLQEALETGCEKCTE 257
CVL + K PE L +H +E+L + + C +
Sbjct: 118 CVLNQPKSKPENSHLNNHAEESLLSTLKTCRD 149
>SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07)
Length = 229
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = +3
Query: 177 GKCTPEGKELKDHLQEALET--GCEKCTEAQEKGAETSIDYLI 299
GKC E LKDH+ E C +C + K I LI
Sbjct: 43 GKCFTEAARLKDHILHTGEKPYQCSQCGKCSAKSGNHKIHVLI 85
>SB_41682| Best HMM Match : PX (HMM E-Value=3.9)
Length = 96
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 191 GSTLALAEHAIHIRLQEPLVLQNFLQVNFV 102
G LA E +H+ LQEP++ +N++ F+
Sbjct: 45 GHPLAQNEKCLHMFLQEPMIDKNYVPGKFI 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,434,628
Number of Sequences: 59808
Number of extensions: 275693
Number of successful extensions: 949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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