Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0373
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77) 29 3.1
SB_59073| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_44579| Best HMM Match : Sialidase (HMM E-Value=8.3) 29 4.1
SB_18882| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16) 29 5.4
SB_29918| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_38864| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_38675| Best HMM Match : HEAT (HMM E-Value=0.0016) 28 9.5
>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 413 RKMCNSRVCKHRCGDSVAHDRRAAVDVNTGLMR 315
R C R C+H C + +H RR A D + G ++
Sbjct: 87 RHACR-RTCRHACRHACSHARRHATDTHAGTLQ 118
>SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)
Length = 738
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -3
Query: 333 QHGIDAIRRQVLQQERLSGRQVRRQRALDGRR 238
Q +DAIR++ Q+ERL R+ RQR L RR
Sbjct: 239 QQRLDAIRKRRRQRERLLRRRRDRQRRLRQRR 270
>SB_59073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -3
Query: 339 GCQHGIDA-IRRQVLQQERLSGRQVRRQRA---LDGRRDAPE 226
G GID +++ Q+ + GR+ RR R LDG RD PE
Sbjct: 399 GLPEGIDIWTEKEMYQRVSIFGRRKRRTRGYRYLDGERDVPE 440
>SB_44579| Best HMM Match : Sialidase (HMM E-Value=8.3)
Length = 172
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = -1
Query: 704 ERRNSVSYDSWTRMYIYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSM--GHQ 531
ER Y + T + T+ H +++ DY + Y G+ N GNH + ++
Sbjct: 65 ERGTGKKYGALTYSNLPTKTWHHVGFTY-DYSTGLQRLYVNGTMVAESNVGNHEIATNYE 123
Query: 530 SRLRNNVNASLMGNS 486
R N+N L +S
Sbjct: 124 IRFAKNLNVILTSSS 138
>SB_18882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -1
Query: 647 LMRHGSWSHCDYRSCYSMSYKGGSH--GVSQNRGNHSMGHQSRLRNNVNASLMGNS*RSN 474
L+ G+WS R C + + G H GV N ++ H L N + S GN R N
Sbjct: 179 LIARGTWSWYPCRRCLVV-HGVGIHVDGVLSYVRNITLYHDGLLSLNED-SRTGNELREN 236
Query: 473 QSHRSFLQKVF 441
F+QKVF
Sbjct: 237 DFRFDFIQKVF 247
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = -3
Query: 300 LQQERLSGRQVRRQRALDGRRDAPEP*LAGVERER**PPLYPGDDHGDPAPAQDGEAVAP 121
L+ L+GR+ L+GR+ P P L G + PPL +P P +G P
Sbjct: 243 LRSYPLNGRKSNPNPPLNGRKSNPNPPLNG-RKSNPNPPL--NGRKSNPNPPHNGRKSNP 299
Query: 120 MAPKNRR 100
P N R
Sbjct: 300 NPPLNGR 306
>SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16)
Length = 494
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 444 HFLKKRSVALVAPSAVSHQA-RVDVISKPTLVS 539
+ L++RSVA+ APSA + R+ S+PTL++
Sbjct: 347 NLLRRRSVAVTAPSAKPNTTRRMSTASRPTLMN 379
>SB_29918| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = -1
Query: 752 MRDRMSTICCTGPNSRERRNSVSYDSWTRMYIYTRLMRHG-SWSHCDYRSCY---SMSYK 585
MR + T+C G N R + +++ Y T Y + HG + + + CY +M Y+
Sbjct: 71 MRYQGHTMCYQGHNMRYQGHTMCYQGHTIRYQGHTMRYHGHTMRYQGHTMCYQGHTMCYQ 130
Query: 584 GGS---HGVSQNRGNHSMGHQ 531
G + G + HSM +Q
Sbjct: 131 GHTMRYQGYNMRYQGHSMRYQ 151
>SB_38864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 492 KQLKEQPEPQIVSSESVRVQELIESGQENVQ 400
+Q ++Q + Q+ + + +QELIES ENV+
Sbjct: 4 QQQQQQQQQQLQQQQVLMMQELIESDGENVE 34
>SB_38675| Best HMM Match : HEAT (HMM E-Value=0.0016)
Length = 606
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -1
Query: 617 DYRSCYSMSYKGGSHGVSQNRGN---HSMGHQSRLRNNVNASLMGN 489
DY+ + SY+G S G Q GN H G+ + L+ N N + GN
Sbjct: 305 DYQVGITESYQGNSSGNLQGNGNGNPHGNGNDN-LQGNGNGNQQGN 349
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,236,765
Number of Sequences: 59808
Number of extensions: 400127
Number of successful extensions: 1280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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