Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0372
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   2.6  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   2.6  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   4.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   4.5  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   4.5  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    25   7.8  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    25   7.8  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 312 PVLCALRSMSWRRILLEYPVPVIEHGMRNRFH 217
           P +CA     W    LE  +P+  H  +N  H
Sbjct: 58  PTICAKLEKKWNAYCLENNIPISTHNEQNDSH 89


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 99  WKMTSLDTRNTVARFFTTVCVHLMFVLYYSL 7
           WK TS D   T  R F T    L   LY+ L
Sbjct: 337 WKSTSFDRMQTALRLFATDGSRLSSFLYHKL 367


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 171 KNECSCVSKYSPDEPCGT 224
           + +C CV K+SPD  C +
Sbjct: 243 EKDCRCVRKFSPDGSCNS 260


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 241  FNNRHWVFQQDSAPAHRAKSTQDW 312
            FNN +W  ++++  AH A    +W
Sbjct: 1280 FNNEYWKIREEAGEAHLAGKEFEW 1303


>SPCC1322.12c |bub1||serine/threonine protein kinase
            Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 196  FDTQLHSFLHLSHKNVPLLSPNKKLPTIP*ARMENDLVGHAEYGCSL 56
            FD  L+  LH+S +N+P+     K+       ME  LV H+  G  L
Sbjct: 990  FDLLLNPTLHVSEENLPMTEELSKIR----IEMEEWLVNHSTGGSGL 1032


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = +1

Query: 76  RVQRGHFPSSLMVWLGVSY---WGLTEVHFCEKGVKTNVVVYQNTVLMNLVEPVSHTMFN 246
           R  +G FP  +    G+     W L          +   +V+QN   ++LV P  HT F 
Sbjct: 205 RQLQGLFPYPVWFETGIPQSFAWSLIAPFIVGCPAENEKLVWQNFPALHLVSPPVHTNFT 264

Query: 247 N 249
           N
Sbjct: 265 N 265


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 355 ASIRAG*SRFHAPPASLVCSSLYELAP 275
           A + A  +R HA P  +VCS +Y+L+P
Sbjct: 293 AQLVAQAARHHATPV-VVCSGIYKLSP 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,036
Number of Sequences: 5004
Number of extensions: 68721
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)