Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0372
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711...    28   6.2  
05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767...    28   8.1  
03_03_0188 + 15269347-15270213                                         28   8.1  

>02_02_0138 +
           7114949-7115656,7116388-7116435,7116830-7117988,
           7118336-7118424,7118697-7118732
          Length = 679

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 163 KGVKTNVVVYQNTVLMNLVEPVSHTMFNNRHWVF 264
           KG K ++  Y N +L  L +     MF+NR WVF
Sbjct: 215 KGYKLDIFAY-NMLLDALAKAGMKIMFDNREWVF 247


>05_03_0362 -
           12973488-12974251,12975346-12975580,12976410-12976738,
           12977277-12977404,12977695-12977879,12977972-12978165,
           12978239-12978368,12978507-12978566,12979037-12979059,
           12979158-12979218,12979677-12979748,12979804-12979924,
           12980351-12980415,12980973-12981089,12981970-12982239
          Length = 917

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 67  RIPRVQRGHFPSSLMVWLGVSYWGLTEVHFCEKGVKTNVVVYQNTVLMNLVEP 225
           RI  + + + P S   WLG  + GLT    C +    +   +   +L NL EP
Sbjct: 81  RIGELMQNNLPYSC--WLGTCFLGLTFQECCNERFAESYSSWFEKILSNLQEP 131


>03_03_0188 + 15269347-15270213
          Length = 288

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 211 SSGLYFDTQLHSFLHLSHKNVPLLSPNKKLPTIP 110
           SS  Y D+  H  LH S  +   +SP++  P  P
Sbjct: 44  SSSSYLDSPFHGLLHTSSSSSATMSPSQAPPPHP 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,345,415
Number of Sequences: 37544
Number of extensions: 455288
Number of successful extensions: 1114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)