Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0372
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09380.1 68414.m01049 integral membrane family protein / nodu... 31 0.73
At5g53550.1 68418.m06654 transporter, putative similar to iron-p... 29 2.9
At3g06080.1 68416.m00696 expressed protein identical to unknown ... 29 2.9
At5g45780.1 68418.m05630 leucine-rich repeat transmembrane prote... 28 5.1
At4g36970.1 68417.m05239 remorin family protein contains Pfam do... 28 5.1
At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative ... 27 9.0
At2g46370.2 68415.m05771 auxin-responsive GH3 family protein sim... 27 9.0
At2g46370.1 68415.m05770 auxin-responsive GH3 family protein sim... 27 9.0
At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family prote... 27 9.0
>At1g09380.1 68414.m01049 integral membrane family protein / nodulin
MtN21-related similar to MtN21 GI:2598575 (root nodule
development) from [Medicago truncatula]
Length = 374
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 1 ERERIIQNKHKVYAHSSEEASNRIPRVQRGH 93
ERE++ Q HKV + S+E+ +R+P G+
Sbjct: 336 EREKVKQQNHKVKSESNEDIESRLPVASSGN 366
>At5g53550.1 68418.m06654 transporter, putative similar to
iron-phytosiderophore transporter protein yellow stripe
1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
OPT oligopeptide transporter protein
Length = 669
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 78 CPTRSFSILAHGMVGSFLLGLNRGTF 155
C +SI G GS+LLGLNR T+
Sbjct: 114 CAVACYSIAVGGGFGSYLLGLNRITY 139
>At3g06080.1 68416.m00696 expressed protein identical to unknown
protein GB:AAF30301 from [Arabidopsis thaliana]
Length = 346
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 99 WKMTSLDTRNTVARFFTTVCVHLMFVLYYS 10
W T LD+ T F T VH FV YYS
Sbjct: 317 WIHTELDSNKTQVFFRTFAPVHFRFVRYYS 346
>At5g45780.1 68418.m05630 leucine-rich repeat transmembrane protein
kinase, putative
Length = 614
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 360 LQSRFESVRLEDMATLGGKACSKPHPNLESLKTSLIK 470
L+ F+ + LE++ L C++PHPNL + ++K
Sbjct: 535 LKGEFDDLVLEEVVELA-LLCTQPHPNLRPRMSQVLK 570
>At4g36970.1 68417.m05239 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 427
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 243 EHGMRNRFHKVHQDCILIHNYIRFYTFLTKMYLC*AP 133
EH + H++ ++ + I + +R +TF+T C AP
Sbjct: 380 EHEQQQGNHQISRNSVKITHLVRRHTFMTPFMTCFAP 416
>At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative
similar to delta7 sterol C-5 desaturase GI:5031219 from
[Arabidopsis thaliana]
Length = 279
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = -2
Query: 351 VFVPDEVDFTRHQPVL---CALRSMSWRRILLEYPVPVIEHGMRNRFHKV-HQDCILIHN 184
V+VP E TR +L A+++M W +L +IEHG + + H + L
Sbjct: 72 VYVPKESIPTRKAMLLQIYVAMKAMPWYTLLPAVSEYMIEHGWTKCYSTLDHFNWFLCFL 131
Query: 183 YIRFYTFLTKMYL 145
YI Y L + +
Sbjct: 132 YIALYLVLVEFMI 144
>At2g46370.2 68415.m05771 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 575
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 354 PVFVPDEVDFTR--HQPVLCALRSMSWRRILLEYPVPVIEHGMRNRFHKVHQ 205
P PDEV F+ HQ + C L S R ++Y V HG+ + F Q
Sbjct: 185 PSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQ 236
>At2g46370.1 68415.m05770 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 575
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 354 PVFVPDEVDFTR--HQPVLCALRSMSWRRILLEYPVPVIEHGMRNRFHKVHQ 205
P PDEV F+ HQ + C L S R ++Y V HG+ + F Q
Sbjct: 185 PSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQ 236
>At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family protein
Contains PF 00561 alpha/beta hydrolase fold
Length = 648
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 409 PSVAISSNLTDSNLDWRRASIRAG*SRFHAPPASLVCSS 293
P +ISSN+ ++N + I AG S+F S+V S
Sbjct: 265 PRQSISSNVLEANSSYNTPEIMAGRSKFDRKVLSMVTKS 303
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,259,865
Number of Sequences: 28952
Number of extensions: 355432
Number of successful extensions: 987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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