Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0371
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   235   4e-63
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   234   1e-62
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.95 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.8  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   8.8  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   8.8  

>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  235 bits (576), Expect = 4e-63
 Identities = 114/201 (56%), Positives = 135/201 (67%)
 Frame = +2

Query: 41  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 220
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 221 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 400
                              TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 401 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 580
           V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GKGHRY
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRY 180

Query: 581 SQTKGGSRRAAWLRRNTLQLR 643
           + +    + A WLR NTL LR
Sbjct: 181 NNS---PQHATWLRHNTLSLR 198


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  234 bits (572), Expect = 1e-62
 Identities = 113/201 (56%), Positives = 135/201 (67%)
 Frame = +2

Query: 41  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 220
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 221 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 400
                              TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 401 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 580
           V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GKGHR+
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRF 180

Query: 581 SQTKGGSRRAAWLRRNTLQLR 643
           + +    + A WLR NTL LR
Sbjct: 181 NNS---PQHATWLRHNTLSLR 198


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 402 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 515
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 407  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 511
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 597 AHAGQLGSDATLFNYVRKR 653
           A AG +  DAT F YV+ R
Sbjct: 240 ARAGMIAPDATTFEYVKNR 258


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 530 LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLRRN---TLQLRAQ 649
           ++SAG S  G GKG +    T   +RRAA   RN   T Q  AQ
Sbjct: 236 VSSAGYSGEGYGKGTYATDTTAEANRRAATGTRNARTTAQRNAQ 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,971
Number of Sequences: 5004
Number of extensions: 64526
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)