Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0371
         (755 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p pro...   292   4e-79
AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L1...   292   4e-79
X76210-1|CAA53803.1|  389|Drosophila melanogaster homeotic ultra...    30   3.0  
X05723-1|CAA29194.1|  389|Drosophila melanogaster Ultrabithorax ...    30   3.0  
U31961-11|AAA84408.1|  380|Drosophila melanogaster UBXIA protein.      30   3.0  
U31961-9|AAA84412.1|  389|Drosophila melanogaster UBXIB protein.       30   3.0  
BT010241-1|AAQ23559.1|  380|Drosophila melanogaster RE43738p pro...    30   3.0  
AE014297-2261|AAF55355.2|  389|Drosophila melanogaster CG10388-P...    30   3.0  
AE014297-2258|AAN13718.1|  380|Drosophila melanogaster CG10388-P...    30   3.0  

>AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p
           protein.
          Length = 204

 Score =  292 bits (716), Expect = 4e-79
 Identities = 136/196 (69%), Positives = 151/196 (77%)
 Frame = +2

Query: 41  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 220
           MGAYRY+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQ   
Sbjct: 1   MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFV 60

Query: 221 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 400
                              TYGKPKSHGVNQLKP R LQSIAEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYW 120

Query: 401 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 580
           +AQD+SYKYFEVIL+D  H AIRRDPKINWI   VHKHRE+RGLTSAG+SSRG+GKG+RY
Sbjct: 121 IAQDASYKYFEVILIDTHHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGIGKGYRY 180

Query: 581 SQTKGGSRRAAWLRRN 628
           SQT GGSRRAAW R+N
Sbjct: 181 SQTIGGSRRAAWKRKN 196


>AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L15
           (YL10) protein homologueprotein.
          Length = 204

 Score =  292 bits (716), Expect = 4e-79
 Identities = 136/196 (69%), Positives = 151/196 (77%)
 Frame = +2

Query: 41  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 220
           MGAYRY+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQ   
Sbjct: 1   MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFV 60

Query: 221 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 400
                              TYGKPKSHGVNQLKP R LQSIAEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYW 120

Query: 401 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 580
           +AQD+SYKYFEVIL+D  H AIRRDPKINWI   VHKHRE+RGLTSAG+SSRG+GKG+RY
Sbjct: 121 IAQDASYKYFEVILIDTHHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGIGKGYRY 180

Query: 581 SQTKGGSRRAAWLRRN 628
           SQT GGSRRAAW R+N
Sbjct: 181 SQTIGGSRRAAWKRKN 196


>X76210-1|CAA53803.1|  389|Drosophila melanogaster homeotic
           ultrabithorax protein protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 530 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRA-QTINIY--LKLSVTFHLLIF 700
           LT  G  S  +GK  RYS++  GS    WL  N L+ R  QT   Y  L+L   FH   +
Sbjct: 262 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHY 319

Query: 701 VCR 709
           + R
Sbjct: 320 LTR 322


>X05723-1|CAA29194.1|  389|Drosophila melanogaster Ultrabithorax
           gene product protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 530 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRA-QTINIY--LKLSVTFHLLIF 700
           LT  G  S  +GK  RYS++  GS    WL  N L+ R  QT   Y  L+L   FH   +
Sbjct: 262 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHY 319

Query: 701 VCR 709
           + R
Sbjct: 320 LTR 322


>U31961-11|AAA84408.1|  380|Drosophila melanogaster UBXIA protein.
          Length = 380

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 530 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRA-QTINIY--LKLSVTFHLLIF 700
           LT  G  S  +GK  RYS++  GS    WL  N L+ R  QT   Y  L+L   FH   +
Sbjct: 253 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHY 310

Query: 701 VCR 709
           + R
Sbjct: 311 LTR 313


>U31961-9|AAA84412.1|  389|Drosophila melanogaster UBXIB protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 530 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRA-QTINIY--LKLSVTFHLLIF 700
           LT  G  S  +GK  RYS++  GS    WL  N L+ R  QT   Y  L+L   FH   +
Sbjct: 262 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHY 319

Query: 701 VCR 709
           + R
Sbjct: 320 LTR 322


>BT010241-1|AAQ23559.1|  380|Drosophila melanogaster RE43738p
           protein.
          Length = 380

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 530 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRA-QTINIY--LKLSVTFHLLIF 700
           LT  G  S  +GK  RYS++  GS    WL  N L+ R  QT   Y  L+L   FH   +
Sbjct: 253 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHY 310

Query: 701 VCR 709
           + R
Sbjct: 311 LTR 313


>AE014297-2261|AAF55355.2|  389|Drosophila melanogaster CG10388-PA,
           isoform A protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 530 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRA-QTINIY--LKLSVTFHLLIF 700
           LT  G  S  +GK  RYS++  GS    WL  N L+ R  QT   Y  L+L   FH   +
Sbjct: 262 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHY 319

Query: 701 VCR 709
           + R
Sbjct: 320 LTR 322


>AE014297-2258|AAN13718.1|  380|Drosophila melanogaster CG10388-PE,
           isoform E protein.
          Length = 380

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 530 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRA-QTINIY--LKLSVTFHLLIF 700
           LT  G  S  +GK  RYS++  GS    WL  N L+ R  QT   Y  L+L   FH   +
Sbjct: 253 LTQYGGISTDMGK--RYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHY 310

Query: 701 VCR 709
           + R
Sbjct: 311 LTR 313


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,739,074
Number of Sequences: 53049
Number of extensions: 767460
Number of successful extensions: 2216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2214
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3458330568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)