Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0371
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           221   3e-58
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           221   5e-58
At3g18050.1 68416.m02296 expressed protein                             29   2.5  
At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloropla...    29   4.4  
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   5.8  

>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  221 bits (541), Expect = 3e-58
 Identities = 107/202 (52%), Positives = 133/202 (65%), Gaps = 1/202 (0%)
 Frame = +2

Query: 41  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 220
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 221 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 400
                               YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 401 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHR 577
           + +DS+YKY+E+ILVDP+H A+R DP+INWI N VHKHRE+RGLTS G+ +RGL GKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 578 YSQTKGGSRRAAWLRRNTLQLR 643
             + +  SRRA W + N+L LR
Sbjct: 181 NHKNR-PSRRATWKKNNSLSLR 201


>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  221 bits (539), Expect = 5e-58
 Identities = 106/202 (52%), Positives = 133/202 (65%), Gaps = 1/202 (0%)
 Frame = +2

Query: 41  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 220
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 221 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 400
                               YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 401 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHR 577
           + +DS+YKY+E+ILVDP+H A+R DP+INWI N VHKHRE+RGLTS G+ +RGL GKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 578 YSQTKGGSRRAAWLRRNTLQLR 643
             + +  SRRA W + N++ LR
Sbjct: 181 NHKNR-PSRRATWKKNNSISLR 201


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 179 CPALWAWERGAYESTDGTAILSHATKNA*HRSVFSYTTPE 60
           CP L AW   AY +T  +  +S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


>At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloroplast
           (ARA6) (THI1) (THI4) identical to SP|Q38814 Thiazole
           biosynthetic enzyme, chloroplast precursor (ARA6)
           {Arabidopsis thaliana}
          Length = 349

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -2

Query: 337 LKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDS--EYNITLFSTVA*SSGFVRPCG 164
           +K+   +   D +  G  + G ++NW L A   HT S  + N+     V  S G   P G
Sbjct: 179 VKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFG 238


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 395 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 496
           YW+AQ + +    V+  D  H +   DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,151,836
Number of Sequences: 28952
Number of extensions: 354775
Number of successful extensions: 846
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)