Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0370
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.3  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   3.9  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   6.9  

>SPBC16E9.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 101

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -1

Query: 381 PVSVTMQCLPV*RVGQSETLSGGGEIRLSCL*IPITSLNQLGQMVARWQKKKQS*LNLP 205
           PVS+T     +  +G    L GGGE  +      IT+  Q+G ++AR Q   +  + +P
Sbjct: 11  PVSITGDMSTLPEIGVRTLLGGGGEDDIKSHWAQITA-GQVGSLLARQQMLVRPDVRIP 68


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 20  TKSAHETREGGTVHGYYSFLDADGKQ 97
           TK+  ++  G ++HG YS L+  G +
Sbjct: 394 TKAIRDSMVGDSIHGLYSILETSGAE 419


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 595 HLCWSESQILMRSVHRVGYRPRDLLPSTXPCTTNRSMESSLRVMCPT*HSKIVYNI 762
           H+ W    IL R   ++   P DLL S      + S + S+R +    H+ + YNI
Sbjct: 427 HVRWP---ILHRGTFQITQAPLDLLLSMITLGMHSSNDLSIRSLAVEIHTTLRYNI 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,802
Number of Sequences: 5004
Number of extensions: 64270
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)