Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0370
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.59 
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)                   30   2.4  
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)                   29   5.5  
SB_52448| Best HMM Match : X (HMM E-Value=1.7)                         28   7.3  
SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)                   28   7.3  
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)                     28   9.6  
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 622  KSVTHSNINDCSHSAKHRATWHRIARASVSQDPTDA*PRPLC 497
            + V ++N  +C        TW+RI   + +Q PTD  PR  C
Sbjct: 1071 RRVNNTNGTNCDDDLNGHTTWYRITGDAGNQMPTDCVPRGHC 1112


>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 1333

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 379  CFGHDAMPPSLKGRTVGDLIWW 314
            CF HD  P  +   T  DL+WW
Sbjct: 983  CFRHDRHPIRINNETRRDLVWW 1004


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 9    RRATQNQPTKPEKEVPSTDIIVS*TPTENRGSCTTRLMIN 128
            +  T N+PT P    P   +++S   TEN+ + T+ + I+
Sbjct: 2048 KTTTSNRPTSPPARWPGVKLLLSLLATENKDNSTSLVYIS 2087


>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
          Length = 634

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 743 LCYVGHITRNEDSIERLVVQGKVEGKRSRGRYPTRWTDLIK 621
           L + GH+ R+   I R +    +EGKR+RGR    W ++++
Sbjct: 560 LRWYGHVQRSTSWI-RWIRDFIIEGKRTRGRPRKNWHEVLR 599


>SB_52448| Best HMM Match : X (HMM E-Value=1.7)
          Length = 549

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 379 CFGHDAMPPSLKGRTVGDLIWW 314
           CF HD  P  +   T  DL WW
Sbjct: 457 CFRHDRHPIRINNETRRDLAWW 478


>SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)
          Length = 1252

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 296  DNLISPPPDKVSDCPTLQTGRHCIVTETG-RCSAMIPRHADLFVPPVRIAIYIQYYV 463
            DN++SPPPD  S    L   +H  V+ T   C+ ++      F P      +++ ++
Sbjct: 984  DNILSPPPDDNSSPWKLAYSKHAQVSGTEIDCAILMGNGDHTFTPAEHFDAFLENFL 1040


>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
          Length = 662

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = -3

Query: 748 FCYVMSGTSLVM----RTPLSGWWCKXKSRAKDLADDIQHDGPTSLKSVTHSNINDCSHS 581
           +C V +GT         T LS W    + +  D  D+I  +GP S +  + S       +
Sbjct: 527 WCVVWTGTGKAFFFNPATRLSVWEKPEELKDNDKVDEIIENGPPSKEEKSKSRKLSLDDA 586

Query: 580 AKHRATWHRIARASVSQDP 524
            +H+A   R  R S  + P
Sbjct: 587 DEHQAAPKRPRRESRDEPP 605


>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1608

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 646  QHDGPTSLKSVTHSNINDCS---HSAKHRATWHRIARASV 536
            +H+GPT +++  H N++D +   +   HR   H   R  +
Sbjct: 1094 RHEGPTHIRTFVHRNVDDAANQDYKDHHRRRSHNRPRPGI 1133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,985,935
Number of Sequences: 59808
Number of extensions: 529398
Number of successful extensions: 1350
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)