Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0369
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger) fa...    30   1.9  
At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger) fa...    30   1.9  
At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative ...    29   4.4  
At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide...    28   5.8  
At1g30550.1 68414.m03737 expressed protein similar to PIMT (GI:1...    28   7.7  

>At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 367

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 13  RYWNIIFYFWYLIRNNW 63
           RYW I+F FW+L+   W
Sbjct: 340 RYWAILFIFWFLVFGIW 356


>At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 363

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 13  RYWNIIFYFWYLIRNNW 63
           RYW I+F FW+L+   W
Sbjct: 336 RYWAILFVFWFLVFGIW 352


>At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative
           similar to delta7 sterol C-5 desaturase GI:5031219 from
           [Arabidopsis thaliana]
          Length = 279

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 604 NRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYY 747
           NR  L +++  + W   P+F+ T++  +     LYF    +W  + YY
Sbjct: 20  NRMVLSHLLPVNLWEPLPHFLQTWLRNYLAGNILYFISGFLWCFYIYY 67


>At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1)
           identical to sterol-C5-desaturase GB:AAD12944 GI:4234768
           from [Arabidopsis thaliana]
          Length = 281

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 604 NRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYY 747
           NR  L +++  + W   P+F+ T++  +     LYF    +W  + YY
Sbjct: 19  NRIVLSHLLPANLWEPLPHFLQTWLRNYLAGTLLYFISGFLWCFYIYY 66


>At1g30550.1 68414.m03737 expressed protein similar to PIMT
           (GI:15127914) [Mus musculus]; similar to hypothetical
           protein GB:AAF19758 GI:6634778 from [Arabidopsis
           thaliana]
          Length = 391

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 324 ILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPP 199
           I L +NN +  G + N I F+ G+ +  APS++G   F +PP
Sbjct: 82  IALAMNNAKVYGVA-NRIDFVTGDFMQLAPSLKGDVLFLSPP 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,479
Number of Sequences: 28952
Number of extensions: 215377
Number of successful extensions: 420
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)