Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0367
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 28 1.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.3
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 26 5.3
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 7.0
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 7.0
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 25 9.3
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 25 9.3
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 9.3
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 610 SAYDFSNATSLTIVSNDDGTPAPID 684
S D++N+ S T+V+NDDGT +D
Sbjct: 101 SCDDYANSAS-TLVTNDDGTKTKVD 124
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 775 KLLSGSLDYQSPHSYLPSERSGRNSTRATKDRS 677
K+ + D++ P+S +PS +GR+S D S
Sbjct: 957 KISKSNFDFRRPYSVIPSRMTGRSSFTQLSDDS 989
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -1
Query: 596 FNSTQSTAI*TDRFATATCSLCHPVVNNSGLLNTALEPWTRTATFLGSGIKMRENST 426
+NS+ ST + + T ++ V +G L T ++P T T+T+L SG + N+T
Sbjct: 929 WNSSNSTIV-----SNVTATITGNVTITTGDLTT-IDPTTFTSTYLSSGFQTVSNTT 979
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 466 VAVLVQGSRAVFKSPELFTTGWHKLHVAVANRSVHIAVDCVELNPVNISAYD-FSNATSL 642
V + V+ +RA F++ W K A R + DC+E N +++ + N S+
Sbjct: 62 VDIAVKVARAAFQTD----APWRKFSSAQRGRCLSRLADCIEQNLEYLASIETLDNGKSI 117
Query: 643 TIVSND 660
T+ D
Sbjct: 118 TLARGD 123
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 571 IAVDCVELNPVNISAYDFSNATSLTIVSNDDGTPAP 678
IAV V +P + S++DF + ++ D+ P+P
Sbjct: 29 IAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSP 64
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 339 SSEPVQCGGNLQCSRTTKAVESSAST 416
++ P GG + TTKAVES+ ST
Sbjct: 538 ATTPAYVGGATKTPSTTKAVESTPST 563
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = -1
Query: 239 PVVSDLSSRYTAIRSTVWKSESFEFGEQK--DLANGAIVVKLSACPLLYEKRIERKTKTY 66
P ++ ++S + A S W+ E + L G + +K + P+L K+ ++ +
Sbjct: 177 PAIAPIASGFIAGSSISWRWEFWILLMLSGVSLLAGVVFLKETYAPVLKRKQAKKLLEKQ 236
Query: 65 GNQKNIVV*LMNI 27
NQK++ V + I
Sbjct: 237 ENQKSVEVKISEI 249
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 283 YTPFEDPGTPELGSHRWCPIYPVD 212
+ P +DP E S RW P+ V+
Sbjct: 95 HAPGDDPNMYESSSERWSPVQSVE 118
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 500 SRVQSYLLRDGTNYTWLSRIDRFI*QSIVL 589
S V++ LLRD NYT + ++D FI + ++L
Sbjct: 634 SAVRAILLRDDVNYTEV-QLDSFIPEIVLL 662
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 51 VFLVTIRLGLPLNSLLIQQRASR*FHDNGSVREILLLS 164
V+ T RL NS + Q++ R +H NG RE++ ++
Sbjct: 566 VYFTTKRLHSLNNSYMDHQKSYR-YHQNGLAREVIKIA 602
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,297
Number of Sequences: 5004
Number of extensions: 63993
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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