Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0366
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   122   2e-29
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.9  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   4.9  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    24   8.5  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    24   8.5  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  122 bits (294), Expect = 2e-29
 Identities = 53/93 (56%), Positives = 67/93 (72%)
 Frame = +2

Query: 2   PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 181
           PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST TLGNF
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209

Query: 182 XXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 280
                         LTP+LW + P  ++P  E+
Sbjct: 210 VKAAFAAASLTYGILTPNLWAERPFGQTPIEEY 242


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 204 LPRHMPTSLLTCGG 245
           LPR +PTSLLT  G
Sbjct: 27  LPRSIPTSLLTAAG 40


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 124 WCTGLLHVSSWFNWHLGKFC*SHIRCHCQD 213
           WC     +SSWFN  L K    +++  CQ+
Sbjct: 59  WCM----LSSWFNSKLSKLSAGYLQFDCQN 84


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional
          regulator Prp45|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 7  HRPLQGHRQVWFRNSPAD 60
          H P  G R+ WF +SP D
Sbjct: 42 HIPPYGQRKGWFPSSPED 59


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 278 TLSMET*SAGYPSTSQE*GRHMSWQWQRMWL*QNFPRCQLNHELTCSNPVHQP 120
           TLS  + S G P   +  GRH S  +   W+ Q F   + +     S   H P
Sbjct: 461 TLSFTSGSEGIPKGVK--GRHFSLAYYFDWMAQEFNLSESDRFTMLSGIAHDP 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,431,601
Number of Sequences: 5004
Number of extensions: 27172
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)