Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0366
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      132   1e-31
07_01_0756 + 5819367-5820038,5820847-5821005                          128   1e-30
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     80   6e-16
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031     29   0.85 
09_02_0200 + 5717867-5717872,5718049-5718351                           26   7.9  
04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846     26   7.9  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  132 bits (318), Expect = 1e-31
 Identities = 58/93 (62%), Positives = 69/93 (74%)
 Frame = +2

Query: 2   PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 181
           PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGNF
Sbjct: 160 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 219

Query: 182 XXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 280
                         LTPD WRD    KSP+ E+
Sbjct: 220 VKATFDCLMKTYGFLTPDFWRDTKFVKSPFQEY 252


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  128 bits (309), Expect = 1e-30
 Identities = 56/93 (60%), Positives = 69/93 (74%)
 Frame = +2

Query: 2   PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 181
           PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGNF
Sbjct: 163 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNF 222

Query: 182 XXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 280
                         LTPD WR+    K+P+ E+
Sbjct: 223 VKATFDCLMKTYGFLTPDFWRETRFIKTPFQEY 255


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 79.8 bits (188), Expect = 6e-16
 Identities = 35/60 (58%), Positives = 46/60 (76%)
 Frame = +2

Query: 2   PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 181
           PHTV CKV  K GSVTVR++  P G+ +V+  VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 48  PHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107


>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
          Length = 538

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 130 YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLA 17
           Y  ++++L+++W  H+    R  + PD  G  +  DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447


>09_02_0200 + 5717867-5717872,5718049-5718351
          Length = 102

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 189 PHTLPLPRHMPTSLLTCGGI 248
           PHT PLP  +PTS  + GG+
Sbjct: 74  PHT-PLPSSLPTSAASWGGV 92


>04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846
          Length = 293

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 37  WFRNSPADSC-PSWYWYCVCASS*EASSDGWCTGL 138
           +FRN  AD C PS Y + VC     +SSD +  GL
Sbjct: 221 YFRNYTADGCVPSSYAW-VCGQGPASSSDWFDRGL 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,948,399
Number of Sequences: 37544
Number of extensions: 210356
Number of successful extensions: 531
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)