Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0366
         (367 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              144   2e-35
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_10909| Best HMM Match : TFIIB (HMM E-Value=0.14)                    27   4.7  
SB_6196| Best HMM Match : rve (HMM E-Value=3.7e-12)                    27   6.2  
SB_59803| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)                   26   8.1  
SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)                   26   8.1  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  144 bits (349), Expect = 2e-35
 Identities = 64/93 (68%), Positives = 70/93 (75%)
 Frame = +2

Query: 2   PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 181
           PHTVPCKVTGKCGS  VRLIPAPRGTGIVSAPVPKKLLQMAG++DCYTS RG T TLGNF
Sbjct: 125 PHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGNF 184

Query: 182 XXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 280
                         LTPD+W++   TK+PY EF
Sbjct: 185 AKATFAAISETYAYLTPDMWKETVFTKTPYQEF 217


>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 32  KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 175
           +CG+  +    + R   ++  P+P  L ++  +Q C   +  STGT G
Sbjct: 591 RCGTHALTKTVSERVPDVLKHPLPPPLQELQELQVCDPPSTSSTGTTG 638


>SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -2

Query: 138 QSCTPAI*RSFLGTGADTIPVPRGAGISRTVTEPHLPVTLQG 13
           +SC PA    + G G D        G   + TEPH     QG
Sbjct: 144 RSCGPAFGDPWFGCGRDLFIADNAGGNKASCTEPHKYARPQG 185


>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 20/90 (22%), Positives = 34/90 (37%)
 Frame = +2

Query: 17  CKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXX 196
           C V G  GS++ RL  A    G +S+ +   + +   +     SA    G++ +      
Sbjct: 492 CSVAGAQGSISSRLCSAISRQGSISSRLCSAISRQGSISSRLCSAISRQGSISSRLSSAI 551

Query: 197 XXXXXXXXXLTPDLWRDIPLTKSPYSEFKV 286
                     + D+     +   P SEFKV
Sbjct: 552 SRRGSMSSRSSSDVGIQGSILSRPNSEFKV 581


>SB_10909| Best HMM Match : TFIIB (HMM E-Value=0.14)
          Length = 666

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 109 ASSDGWCTGLLHVSSWFNWH-LGKFC*SHIRCHCQDICLPH 228
           A   G+  G  HV +   W+ L   C  H++ H Q  C PH
Sbjct: 41  ADEGGYLKGQCHVYTISFWYILWSLC--HLQGHTQSTCAPH 79


>SB_6196| Best HMM Match : rve (HMM E-Value=3.7e-12)
          Length = 444

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 197 RMWL*QNFPRCQLNHELTCSNPVHQPSEEAS*ELAQTQYQYHEGQESAGLLRNHTCR 27
           ++W+ +    C L  E   SN       +A   LA  Q Q H  QE++G +R  TCR
Sbjct: 79  QVWVAEIVDECILGLEFLVSNNCSVNFVDACLCLAGEQVQLHGVQENSGEIR--TCR 133


>SB_59803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 180 LLKPHTLPLPRHMPTSLLTCGGISR*LSLHTQSSKSKTVIV 302
           L  P +LP PR +      C G+ R LS      + K V++
Sbjct: 33  LYNPESLPSPRAVKVRSRVCPGLRRSLSYMINLEEHKNVVL 73


>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
          Length = 237

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 2   PHTVPCKVTGKC--GSVTVRLIPAPRGTGIVSAPVPKKLLQMAG 127
           P T P   T     G+VTV   P+P  T I +   P  +L ++G
Sbjct: 171 PQTPPSPSTNASAGGTVTVMATPSPLLTDITAGATPAPVLPLSG 214


>SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)
          Length = 628

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 99  FLRSFFRWLVYRIATRQLVVQLAPWE 176
           F  SF+RWL  R++  Q   +LA  E
Sbjct: 489 FAESFYRWLAQRLSRAQYSKELASGE 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,393,632
Number of Sequences: 59808
Number of extensions: 225579
Number of successful extensions: 525
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)