Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0366
(367 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 127 3e-30
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 126 6e-30
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 126 6e-30
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 126 6e-30
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 126 6e-30
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 126 6e-30
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 40 4e-04
At1g72390.1 68414.m08373 expressed protein 31 0.31
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 2.2
At4g03740.1 68417.m00513 hypothetical protein 27 2.9
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 27 2.9
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain... 27 5.0
At4g24200.1 68417.m03474 expressed protein hypothetical protein ... 26 8.8
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 26 8.8
At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase... 26 8.8
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 127 bits (306), Expect = 3e-30
Identities = 56/92 (60%), Positives = 68/92 (73%)
Frame = +2
Query: 2 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 181
PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 162 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 221
Query: 182 XXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 277
LTP+ W++ +KSPY E
Sbjct: 222 VKATFDCLQKTYGFLTPEFWKETRFSKSPYQE 253
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 126 bits (303), Expect = 6e-30
Identities = 55/92 (59%), Positives = 68/92 (73%)
Frame = +2
Query: 2 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 181
PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 171 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 230
Query: 182 XXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 277
LTP+ W++ ++SPY E
Sbjct: 231 VKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 262
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 126 bits (303), Expect = 6e-30
Identities = 55/92 (59%), Positives = 68/92 (73%)
Frame = +2
Query: 2 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 181
PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 170 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229
Query: 182 XXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 277
LTP+ W++ ++SPY E
Sbjct: 230 VKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 126 bits (303), Expect = 6e-30
Identities = 55/92 (59%), Positives = 68/92 (73%)
Frame = +2
Query: 2 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 181
PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 170 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229
Query: 182 XXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 277
LTP+ W++ ++SPY E
Sbjct: 230 VKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 126 bits (303), Expect = 6e-30
Identities = 55/92 (59%), Positives = 68/92 (73%)
Frame = +2
Query: 2 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 181
PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 170 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229
Query: 182 XXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 277
LTP+ W++ ++SPY E
Sbjct: 230 VKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 126 bits (303), Expect = 6e-30
Identities = 55/92 (59%), Positives = 68/92 (73%)
Frame = +2
Query: 2 PHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 181
PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGNF
Sbjct: 170 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229
Query: 182 XXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 277
LTP+ W++ ++SPY E
Sbjct: 230 VKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 8 TVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 178
T P + G G+ V L PA GTG+++ + +L+MAGV++ GS L N
Sbjct: 217 TFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNN 273
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 218 HMSWQWQRMWL*QNFPRCQLNHELTCSNPVHQPSEE-AS*ELAQTQYQYHEGQESA 54
+M+ Q Q+ L Q + QL H+ P+ QPS++ A Q Q Q HE + A
Sbjct: 920 YMNQQQQQQQLQQQPQQQQLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQA 975
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 5 HTVPCKVTGKCGSVTVRL 58
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At4g03740.1 68417.m00513 hypothetical protein
Length = 345
Score = 27.5 bits (58), Expect = 2.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 19 QGHRQVWFRNSPADSCPSWYWYC 87
+ ++++WFR SCP W C
Sbjct: 60 RNNQEIWFRTFALGSCPHTLWPC 82
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 5 HTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 160
HT+ + + L PAP TG+ + V K +L +AG ++ + GS
Sbjct: 427 HTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSKVIGS 478
>At4g27910.1 68417.m04006 PHD finger protein-related / SET
domain-containing protein (TX4) nearly identical over
285 amino acids to trithorax 4 [Arabidopsis thaliana]
GI:16118405; contains Pfam profiles PF00856: SET domain,
PF00855: PWWP domain; identical to cDNA trithorax 4
(TX4) partial cds GI:16118404
Length = 1027
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 108 SFFRWLVYRIATRQLVVQLAPWEILLKPHTLPL 206
SF+RW+ + Q + AP + LLK H PL
Sbjct: 328 SFYRWIQETAVSNQELNNNAPRQGLLKKHRNPL 360
>At4g24200.1 68417.m03474 expressed protein hypothetical protein -
Arabidopsis thaliana,PIR2:T06677
Length = 1000
Score = 25.8 bits (54), Expect = 8.8
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Frame = -3
Query: 164 QLNHELTCSNPVHQPSEEAS*ELAQTQYQY------HEGQESAGL--LRNHTCR*PCKG 12
++ E+ P H SEE S E Q+ QY H G S GL NH+ P G
Sbjct: 487 EVAREVDSGEPSHSSSEELSDESGQSGSQYSRDDDVHTGSPSKGLSVTENHSFEEPHVG 545
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +1
Query: 133 GLLHVSSWFNWHLGKFC*SH----IRCHCQDI 216
G LH S F+ LGKFC S IR H ++I
Sbjct: 1004 GFLHAESLFSAALGKFCCSAWKSCIRSHGEEI 1035
>At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase (PG1) GI:5669846,
(PG2) GI:5669848 [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 470
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 121 HLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAG 26
H+KK+ RRH+ +T G P Y +T G
Sbjct: 34 HVKKIKPKHRRHSKNTPTGSPAPAPYPSTNEG 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,739,904
Number of Sequences: 28952
Number of extensions: 158191
Number of successful extensions: 399
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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