Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0365
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58554| Best HMM Match : TAF (HMM E-Value=7.9)                       30   1.5  
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_55267| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_14515| Best HMM Match : ScdA_N (HMM E-Value=6.1)                    27   8.0  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          23   8.8  

>SB_58554| Best HMM Match : TAF (HMM E-Value=7.9)
          Length = 321

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 225 LKETLPDALEHECVKCTGKQKSGADKVIRHLVNKRPDLWKELAVKYDPDNIY 380
           L E +PD ++H  +K    +K   ++V R      P  W+E     DP+  Y
Sbjct: 18  LDEDIPDDVKHRLLKPPVPEKVWTEEVWREFDPLLPGRWQEGPESLDPETYY 69


>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 334 SGRLFTKCLMTLSAPDFCFPVHLTHSCSRASGRVSFKALPSG 209
           SGRL ++ L +   P  C P     S    SGR+  + LPSG
Sbjct: 237 SGRLPSRWLPSRRLPSGCLPSRRLPSGRLPSGRLPSRRLPSG 278


>SB_55267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 81  VTWARPESTYTDKWDNINVDEILESNRLLKGYVDC 185
           + W+  E  Y ++  + NV ++  SNRL    VDC
Sbjct: 225 LAWSHGECRYCNRVISANVSDLRISNRLSVNVVDC 259


>SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 285 KSGADKVIRHLVNKRPDLWKELAVKYDPDNIYQARYKDKIDAV 413
           +SG   +     +KR   W+E+   Y+ DN+Y   + +  D V
Sbjct: 86  ESGTKNIFGGYSSKRMKDWQEIIRLYEKDNVYLGEFDECQDIV 128


>SB_14515| Best HMM Match : ScdA_N (HMM E-Value=6.1)
          Length = 609

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 225 LKETLPDALEHECVKCTGKQKSGADKVIRHLVNKRPDLWKELAVKYDPDNIY 380
           L E +PD ++H  +K     K    +V R      P  W+E     DP+  Y
Sbjct: 29  LDEDIPDDVKHRLLKPLVPAKVWTKEVWREFDPLLPGRWQEGPESLDPEKYY 80


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 23.0 bits (47), Expect(2) = 8.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 71  CHHYYDQYFH 42
           CHHYY  Y++
Sbjct: 521 CHHYYYYYYY 530



 Score = 22.6 bits (46), Expect(2) = 8.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 68  HHYYDQYFHCRLLIIYPVS 12
           ++YY  Y++ R ++ YPV+
Sbjct: 530 YYYYYYYYYPRQVVRYPVN 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,331,015
Number of Sequences: 59808
Number of extensions: 320344
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)