Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0363
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   1.7  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.0  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 290 YFPSFKSKNHLTDT-RILATHENSRVRSFFDSYIA 189
           Y P  K+  HL+   R L+ HE++ + SFFD+ +A
Sbjct: 284 YCPKDKTLVHLSPPERELSVHEDAFIGSFFDNQLA 318


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 162 RLKSFECKLC*NKKVSPLCLQFRELFC 82
           +L+ FEC +C N    P+ L    +FC
Sbjct: 354 QLRDFECAICSNVAYKPVRLGCSHVFC 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,772
Number of Sequences: 5004
Number of extensions: 46334
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)