Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0363
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   5.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +1

Query: 10  FFFGMQIYCRYTFYEEISKYTGAFTEQFPKLKTERRDLFI 129
           FFF + +    + +  +  +  A  +++P+L  +R++LFI
Sbjct: 380 FFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFI 419


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +1

Query: 10  FFFGMQIYCRYTFYEEISKYTGAFTEQFPKLKTERRDLFI 129
           FFF + +    + +  +  +  A  +++P+L  +R++LFI
Sbjct: 433 FFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFI 472


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 515 ERGKVSKISLLS*AHLSMLCNCTFNYYSKTN 607
           ER K  KI     + LS  CN + NYY+  N
Sbjct: 296 ERSKEPKII----SSLSNSCNYSNNYYNNNN 322


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 150 FECKLC*NKKVSPLCLQFRE 91
           FEC+   NK+ S +CL+F E
Sbjct: 106 FECE---NKEKSNVCLKFEE 122


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 332 LNSENHSVTPLYENEEKYL-ISRLNTQII*NVPTTVNKLVLLHITIIDQ 475
           +N  N  V     ++++ L IS +   I+  +PT  N + L ++  +DQ
Sbjct: 555 INVANRYVYASQPDKDRVLVISEIQMVIVDVIPTDKNPVQLWYVPSLDQ 603


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,793
Number of Sequences: 438
Number of extensions: 3303
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)