Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0362
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    23   1.1  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    24   8.5  

>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 23.0 bits (47), Expect(2) = 1.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 117 NPFVLKYYKY*KIETNLAYT 176
           +P +LKY  Y ++E ++A+T
Sbjct: 157 HPLLLKYQWYWRVEPDVAFT 176



 Score = 22.2 bits (45), Expect(2) = 1.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 231 TSTFKFYLNPTSRSQTFFFI*TKKKNYPVIPK 326
           TS ++   N TS    FF    KK+NY +  K
Sbjct: 214 TSAYRRNNNLTSNMWKFFLDAPKKENYDISRK 245


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 332 NSLRDNRVIFFFSSNKKKSLRP 267
           +++RD R+   F  NK K LRP
Sbjct: 187 SNVRDERLYHSFRENKVKFLRP 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,505
Number of Sequences: 5004
Number of extensions: 16969
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)