Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0362
(365 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X92663-1|CAA63351.1| 232|Drosophila melanogaster ubiquitin-conj... 28 4.3
AY094899-1|AAM11252.1| 232|Drosophila melanogaster RE74673p pro... 28 4.3
AE014134-1951|AAN10762.1| 232|Drosophila melanogaster CG6720-PB... 28 4.3
AE014134-1950|AAF53008.1| 232|Drosophila melanogaster CG6720-PA... 28 4.3
BT024449-1|ABC86511.1| 1403|Drosophila melanogaster GH15984p pro... 27 5.7
AY118968-1|AAM50828.1| 531|Drosophila melanogaster LD45876p pro... 27 5.7
AL031884-3|CAA21413.1| 658|Drosophila melanogaster EG:23E12.2 p... 27 5.7
AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protei... 27 10.0
AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair p... 27 10.0
AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA ... 27 10.0
>X92663-1|CAA63351.1| 232|Drosophila melanogaster
ubiquitin-conjugating enzyme UbcD2 protein.
Length = 232
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 59 Y*FK*NLIKFNTTQYNCNI*SFRTKIL*ILKDRNQPGL 172
Y FK + F T Y+CNI S L ILKD P L
Sbjct: 145 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPAL 182
>AY094899-1|AAM11252.1| 232|Drosophila melanogaster RE74673p
protein.
Length = 232
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 59 Y*FK*NLIKFNTTQYNCNI*SFRTKIL*ILKDRNQPGL 172
Y FK + F T Y+CNI S L ILKD P L
Sbjct: 145 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPAL 182
>AE014134-1951|AAN10762.1| 232|Drosophila melanogaster CG6720-PB,
isoform B protein.
Length = 232
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 59 Y*FK*NLIKFNTTQYNCNI*SFRTKIL*ILKDRNQPGL 172
Y FK + F T Y+CNI S L ILKD P L
Sbjct: 145 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPAL 182
>AE014134-1950|AAF53008.1| 232|Drosophila melanogaster CG6720-PA,
isoform A protein.
Length = 232
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 59 Y*FK*NLIKFNTTQYNCNI*SFRTKIL*ILKDRNQPGL 172
Y FK + F T Y+CNI S L ILKD P L
Sbjct: 145 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPAL 182
>BT024449-1|ABC86511.1| 1403|Drosophila melanogaster GH15984p protein.
Length = 1403
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = -1
Query: 365 LNDPILLIKKKNSLRDNRVIFFFSSNKKKSLRPRCWIKIKFKCRSLKF*SVRSLK--SYM 192
L P L+++ N + + FF SS+ +++ + +K KC ++ SL+ +++
Sbjct: 990 LATPNLVLRLGNKANNKTITFFLSSDFERTQWIDSILSLKQKCNLPGANTINSLEVTAFI 1049
Query: 191 I*VQTGV-SQVGFYLL 147
+ +Q G+ +++G YL+
Sbjct: 1050 VAMQKGMKTEMGSYLM 1065
>AY118968-1|AAM50828.1| 531|Drosophila melanogaster LD45876p
protein.
Length = 531
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = -1
Query: 365 LNDPILLIKKKNSLRDNRVIFFFSSNKKKSLRPRCWIKIKFKCRSLKF*SVRSLK--SYM 192
L P L+++ N + + FF SS+ +++ + +K KC ++ SL+ +++
Sbjct: 118 LATPNLVLRLGNKANNKTITFFLSSDFERTQWIDSILSLKQKCNLPGANTINSLEVTAFI 177
Query: 191 I*VQTGV-SQVGFYLL 147
+ +Q G+ +++G YL+
Sbjct: 178 VAMQKGMKTEMGSYLM 193
>AL031884-3|CAA21413.1| 658|Drosophila melanogaster EG:23E12.2
protein.
Length = 658
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = -1
Query: 365 LNDPILLIKKKNSLRDNRVIFFFSSNKKKSLRPRCWIKIKFKCRSLKF*SVRSLK--SYM 192
L P L+++ N + + FF SS+ +++ + +K KC ++ SL+ +++
Sbjct: 298 LATPNLVLRLGNKANNKTITFFLSSDFERTQWIDSILSLKQKCNLPGANTINSLEVTAFI 357
Query: 191 I*VQTGV-SQVGFYLL 147
+ +Q G+ +++G YL+
Sbjct: 358 VAMQKGMKTEMGSYLM 373
>AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protein
protein.
Length = 614
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 344 IKKKNSLRDNRVIFFFSSNKKKSLRPRCWIKIKFKC 237
I+ KNS NRV F S++ +S P W ++ C
Sbjct: 95 IESKNSSNPNRVRCFSSTSLAESALPEKWKLLQIVC 130
>AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair
protein XRCC1 protein.
Length = 614
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 344 IKKKNSLRDNRVIFFFSSNKKKSLRPRCWIKIKFKC 237
I+ KNS NRV F S++ +S P W ++ C
Sbjct: 95 IESKNSSNPNRVRCFSSTSLAESALPEKWKLLQIVC 130
>AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA
protein.
Length = 614
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 344 IKKKNSLRDNRVIFFFSSNKKKSLRPRCWIKIKFKC 237
I+ KNS NRV F S++ +S P W ++ C
Sbjct: 95 IESKNSSNPNRVRCFSSTSLAESALPEKWKLLQIVC 130
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,057,658
Number of Sequences: 53049
Number of extensions: 151500
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 943048980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -