Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0361
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.3  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   9.7  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   9.7  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 653 FIINIF*KHVYLLKISKKLSEHFLFYLYFCIC 748
           F    F   ++++  S     HFLF+ + C+C
Sbjct: 133 FSFLFFLSQIFIVYFSSFPILHFLFFFFLCVC 164


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -3

Query: 726 NRKCSDNFFEILSRYTCF*KMFIIKRFCYSNQNSTGAFKTEIFYPRCNFFIS 571
           N KC+ +   IL +Y      ++    CY +   TG   T+I   +C++ I+
Sbjct: 216 NLKCAQDILIILGKYFQVQDDYLD---CYGDPTVTGKIGTDILDNKCSWIIN 264


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 170 FTPFGCSCVKCEKSIEKT*RHFRKWQ 247
           F  FG    + EK IEKT R+F K+Q
Sbjct: 308 FDQFGVYDKEYEKKIEKTKRNFPKFQ 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,415
Number of Sequences: 5004
Number of extensions: 64744
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)