Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0361
         (812 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_42315| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  

>SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 461 RESLVKVISFIKFNNLFNKFTNWIHMIAKYIFFLYKSTILFCKMQNVMK*KSSD-FLYIQ 285
           R SL  +IS +  N  FN+F+  +H+     F    S ++F   ++++     D F++I 
Sbjct: 166 RSSLRSLISLLGINIQFNEFSPDVHIDVWITFARRNSLVVFSDQEDMLVQGVLDHFVWIA 225

Query: 284 FC 279
           FC
Sbjct: 226 FC 227


>SB_42315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -1

Query: 542 FIKINISVVNMWFYFKIS*FTMLVS*KRESLVKVISFIKFNNLFNKFTNWIHMIAKYIFF 363
           F+K N  V N WF F I  F        E  V+ +SF      F    N +  +   +F+
Sbjct: 190 FLKSNPLVQNSWFLFDIGCFGWFTF---ECAVRFLSFPSKAEYFANLANCVDFLTVVVFY 246

Query: 362 LY 357
           ++
Sbjct: 247 VF 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,800,064
Number of Sequences: 59808
Number of extensions: 386567
Number of successful extensions: 675
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)