Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0360
         (455 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1ZDP3 Cluster: Two component regulator three Y motif f...    33   2.2  

>UniRef50_A1ZDP3 Cluster: Two component regulator three Y motif
            family; n=1; Microscilla marina ATCC 23134|Rep: Two
            component regulator three Y motif family - Microscilla
            marina ATCC 23134
          Length = 1112

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 14/33 (42%), Positives = 25/33 (75%)
 Frame = +3

Query: 177  ILNSIVAPFKMISSDNILNS*HRNLKLPLNRKS 275
            +LN+IV   +++S+D+ILN  HR +K+ L ++S
Sbjct: 939  LLNNIVKANQIVSADSILNQLHRGVKMALKQES 971


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,261,842
Number of Sequences: 1657284
Number of extensions: 6128136
Number of successful extensions: 12171
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 11803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12168
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)