Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0360
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    26   2.4  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   5.5  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    24   9.6  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    24   9.6  

>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 83  LRCAEKTSILRKSVCNENSKNI 18
           LR ++  SILR  VC +N KNI
Sbjct: 82  LRTSDFQSILRSVVCPKNGKNI 103


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 319 YWHKLQSIREFLTAYDLRFSGSFKFLCYEFNILSLLIILNGATMEF 182
           +++  + ++ F    ++ F   F+FL YE + L L++  N + + F
Sbjct: 297 FYYAEEHLKLFTHVTEISFVKLFEFLAYEMDELRLIMEENSSFIRF 342


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 69  LCTTEWSGICKELET*YAR*LTKLNAYGVLKAII 170
           L   EW+ ICKEL+  Y     +++ +G+ K I+
Sbjct: 30  LAKREWTWICKELKLLY----PEISKHGLRKKIV 59


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 132 TKLNAYGVLKAIICRILNSIVAPFKMISSDNILN 233
           TK   YG+  A++  I      P ++I+  NI+N
Sbjct: 170 TKYEQYGIYAALLFVISAMTAIPSRVIAKVNIIN 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,799
Number of Sequences: 5004
Number of extensions: 28997
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)