Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0358
(769 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 293 4e-78
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 289 5e-77
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 285 1e-75
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 281 1e-74
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 279 4e-74
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 270 3e-71
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 266 3e-70
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 262 7e-69
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 258 1e-67
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 255 1e-66
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 238 1e-61
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 235 7e-61
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 231 1e-59
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 231 1e-59
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 230 3e-59
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 229 4e-59
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 223 3e-57
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 220 4e-56
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 215 8e-55
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 215 1e-54
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 207 2e-52
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 205 8e-52
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 205 8e-52
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 203 4e-51
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 200 3e-50
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 192 1e-47
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 186 5e-46
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 184 2e-45
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 182 1e-44
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 176 4e-43
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 176 6e-43
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 175 1e-42
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 169 7e-41
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 159 7e-38
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 159 9e-38
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 153 5e-36
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 152 8e-36
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 147 2e-34
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 142 7e-33
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 137 2e-31
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 132 9e-30
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 132 9e-30
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 130 5e-29
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 126 8e-28
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 125 1e-27
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 124 2e-27
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 124 2e-27
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 124 3e-27
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 124 3e-27
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 124 3e-27
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 122 7e-27
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 120 5e-26
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 118 1e-25
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 118 2e-25
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 115 1e-24
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 114 2e-24
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 110 4e-23
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 109 6e-23
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 109 7e-23
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 108 1e-22
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 108 2e-22
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 107 3e-22
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 104 2e-21
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 103 4e-21
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 103 5e-21
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 101 1e-20
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 101 2e-20
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 101 2e-20
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 101 3e-20
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 100 3e-20
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 100 8e-20
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 99 1e-19
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 99 1e-19
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 99 1e-19
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 98 2e-19
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 94 3e-18
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 93 5e-18
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 93 7e-18
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 91 2e-17
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 91 3e-17
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 91 4e-17
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 90 5e-17
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 90 6e-17
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 87 5e-16
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 86 8e-16
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 84 4e-15
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 83 6e-15
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 83 1e-14
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 82 1e-14
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 81 3e-14
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 81 4e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 80 5e-14
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 73 8e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 71 3e-11
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 59 1e-07
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 1e-07
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 58 2e-07
UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2; Ya... 58 2e-07
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 55 2e-06
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=... 55 2e-06
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 54 4e-06
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 51 3e-05
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre... 50 5e-05
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 49 1e-04
UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br... 49 1e-04
UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=... 48 2e-04
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 3e-04
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 46 8e-04
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 46 0.001
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 44 0.004
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 36 1.5
UniRef50_Q2Y5N3 Cluster: Integral membrane proteins containing u... 35 2.6
UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 35 2.6
UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1; Pi... 34 3.4
UniRef50_P98004 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 34 4.5
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu... 33 7.8
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 293 bits (718), Expect = 4e-78
Identities = 152/233 (65%), Positives = 163/233 (69%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NHKDIGTLYFIF I +G++GTSL LLIRAELG PGSLIGDDQIYNTIVTAHA
Sbjct: 8 NHKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMV 67
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYP
Sbjct: 68 MPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYP 127
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PLSSNIAH G SVDLAIFSLHLAGISS SFDQ+PLFV AVGI
Sbjct: 128 PLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGI 187
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 701
TAF AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 188 TAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 289 bits (709), Expect = 5e-77
Identities = 151/255 (59%), Positives = 170/255 (66%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NHKDIGTLY IF +G+IGT+L LLIRAELG PG+L+GDDQIYN IVTAHA
Sbjct: 12 NHKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMV 71
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYP
Sbjct: 72 MPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYP 131
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+ N+AH G SVDLAIFSLHLAGISS S Q PLFV +V I
Sbjct: 132 PLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLI 191
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
TA A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG
Sbjct: 192 TAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG 251
Query: 723 FGIISHIISQERGKK 767
FG+ISH+++ GKK
Sbjct: 252 FGMISHVVTYYAGKK 266
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 285 bits (698), Expect = 1e-75
Identities = 146/255 (57%), Positives = 167/255 (65%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NHKDIGTLY +F +G++GT+L LLIRAEL PG+L+GDDQIYN IVTAHA
Sbjct: 11 NHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMV 70
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYP
Sbjct: 71 MPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYP 130
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+ N+AH G SVDL IFSLHLAG+SS S Q PLFV AV +
Sbjct: 131 PLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLV 190
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
TA A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG
Sbjct: 191 TAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG 250
Query: 723 FGIISHIISQERGKK 767
FGIISH+++ GKK
Sbjct: 251 FGIISHVVAYYAGKK 265
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 281 bits (689), Expect = 1e-74
Identities = 143/255 (56%), Positives = 167/255 (65%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NHKDIGTLY +F +G++GT+L LLIRAEL PG+L+GDDQIYN IVTAHA
Sbjct: 11 NHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMV 70
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYP
Sbjct: 71 MPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYP 130
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+ N+AH G SVDL IFSLHLAG+SS + Q PLFV +V +
Sbjct: 131 PLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLV 190
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
TA A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG
Sbjct: 191 TAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG 250
Query: 723 FGIISHIISQERGKK 767
FG+ISH+++ GKK
Sbjct: 251 FGMISHVVTYYAGKK 265
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 279 bits (685), Expect = 4e-74
Identities = 143/255 (56%), Positives = 167/255 (65%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NHKDIGTLY +F +G++GT+L LLIRAELG PG+L+G+D IYN IVTAHA
Sbjct: 11 NHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMV 70
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYP
Sbjct: 71 MPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYP 130
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+ N +H G SVDL IFSLHLAG+SS + Q PLFV +V I
Sbjct: 131 PLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLI 190
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
TA A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG
Sbjct: 191 TAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG 250
Query: 723 FGIISHIISQERGKK 767
FG+ISHI++ GKK
Sbjct: 251 FGMISHIVTYYSGKK 265
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 270 bits (661), Expect = 3e-71
Identities = 140/220 (63%), Positives = 150/220 (68%)
Frame = +3
Query: 54 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 233
++GTSL LLIR ELG PGSLIGDDQIYNTIVTAHA N L+PL+L
Sbjct: 1 MVGTSLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLML 60
Query: 234 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 413
GAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAI
Sbjct: 61 GAPDMAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAI 120
Query: 414 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 593
FSLHLAGISS SFDQ+PLF+ AVGITA AGAIT
Sbjct: 121 FSLHLAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAIT 180
Query: 594 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 713
+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 181 MLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 266 bits (653), Expect = 3e-70
Identities = 137/256 (53%), Positives = 163/256 (63%), Gaps = 2/256 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXX 176
NHKDIGTLYFIF +G++GT +LIR EL PG I G+ Q+YN ++TAHA
Sbjct: 12 NHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFF 71
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N VP+++GAPD+AFPR+NNI F +VE G+GTG TV
Sbjct: 72 MVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTV 131
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLS +H G +VDLAIFSLHL+G+SS + +LPLFV +V
Sbjct: 132 YPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSV 191
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
+TAF AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF FFGHPEVYILIL
Sbjct: 192 LVTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILIL 251
Query: 717 PGFGIISHIISQERGK 764
PGFGIISHI+S GK
Sbjct: 252 PGFGIISHIVSTFSGK 267
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 262 bits (642), Expect = 7e-69
Identities = 137/256 (53%), Positives = 161/256 (62%), Gaps = 2/256 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
N KDIGTLY IF + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 9 NAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFF 68
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV
Sbjct: 69 MVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTV 128
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLS +H G SVDLAIFSLHL+GISS + +LPLFV A+
Sbjct: 129 YPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAI 188
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
+TA AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+
Sbjct: 189 FVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILII 248
Query: 717 PGFGIISHIISQERGK 764
PGFG++SHI+S GK
Sbjct: 249 PGFGMVSHIVSAFSGK 264
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 258 bits (632), Expect = 1e-67
Identities = 133/248 (53%), Positives = 159/248 (64%)
Frame = +3
Query: 24 LYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXX 203
LYF+F + SG++G S+ L+IR ELG PGSLIG+DQIYN+IVT+HA
Sbjct: 2 LYFMFGMWSGMLGFSMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGG 61
Query: 204 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 383
N L+PL+LG+PD++FPR+NN+ F + G GTG TVYPPLS +
Sbjct: 62 FGNWLIPLMLGSPDMSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILG 121
Query: 384 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 563
H G SVDL IFSLHLAG SS + D++ LF +V ITA
Sbjct: 122 HGGMSVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLL 181
Query: 564 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 743
AGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPGFGIISH+
Sbjct: 182 SLPVLAGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGIISHM 241
Query: 744 ISQERGKK 767
I E GKK
Sbjct: 242 IFNESGKK 249
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 255 bits (624), Expect = 1e-66
Identities = 131/251 (52%), Positives = 160/251 (63%), Gaps = 2/251 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
NHKDIGTLY IF SG++G + +LIR EL P + L+G+ QIYN ++TAHA
Sbjct: 17 NHKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFF 76
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N LVP+++G+PD+AFPR+NNI F +VE G GTG TV
Sbjct: 77 MVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTV 136
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLSS +H G +VDLAIFSLH++G SS S ++PLFV ++
Sbjct: 137 YPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSI 196
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
+TAF AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF FFGHPEVYILIL
Sbjct: 197 LVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILIL 256
Query: 717 PGFGIISHIIS 749
PGFG+ISHI+S
Sbjct: 257 PGFGMISHIVS 267
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 238 bits (582), Expect = 1e-61
Identities = 126/251 (50%), Positives = 153/251 (60%), Gaps = 2/251 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
N KDI LYF+ I SG+ GT++ L+IR EL PGS L G+ Q++N +V HA
Sbjct: 10 NAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFF 69
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N L+PL++GA D AFPRINNI F +VE+GAGTG TV
Sbjct: 70 LVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTV 129
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLSS AH G SVDLAIF+LHL ISS + +LPLFV ++
Sbjct: 130 YPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSI 189
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
ITAF + IT+LL DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+
Sbjct: 190 FITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILII 249
Query: 717 PGFGIISHIIS 749
PGFGIISH++S
Sbjct: 250 PGFGIISHVVS 260
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 235 bits (576), Expect = 7e-61
Identities = 127/255 (49%), Positives = 150/255 (58%), Gaps = 1/255 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXX 179
N KDIG LY I+ + +G+IGT+ +LIR EL PG I D+Q+YN+I+TAHA
Sbjct: 11 NAKDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFM 70
Query: 180 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 359
N L+PL LG PD+ FPR+NNI + +ENG GTG T+Y
Sbjct: 71 VMPALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLY 130
Query: 360 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 539
PPLS +H G SVDLAIF LHL+GISS +L LF AV
Sbjct: 131 PPLSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVV 190
Query: 540 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 719
ITA AG IT++LTDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+P
Sbjct: 191 ITAVLLLLSLPVLAGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIP 250
Query: 720 GFGIISHIISQERGK 764
GFGIIS IS K
Sbjct: 251 GFGIISTTISANSNK 265
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 231 bits (566), Expect = 1e-59
Identities = 120/229 (52%), Positives = 142/229 (62%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NHKDIG+LY +F SG IGT+ +LIR EL +PGS++GDD +YN IVTAHA
Sbjct: 12 NHKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLV 71
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N VPL++GAPD+AFPR+NNI F +VE GAGTG TVYP
Sbjct: 72 MPTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYP 131
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+S AH G SVD+AIFSLHLAG+SS + ++PLFV +V I
Sbjct: 132 PLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLI 191
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 689
TA AGAIT+LLTDR NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 192 TAILLLLSLPVLAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 231 bits (566), Expect = 1e-59
Identities = 121/251 (48%), Positives = 152/251 (60%), Gaps = 2/251 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
N KDI +YF+ + SG+ G+++ ++IR EL PGS L G+ Q++N +V HA
Sbjct: 10 NAKDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFF 69
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N ++PL++GA D++FPRIN+I F +VE+GAGTG TV
Sbjct: 70 LAMPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTV 129
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLSS AH G SVDLAIFSLHL ISS S ++PLFV A+
Sbjct: 130 YPPLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAI 189
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
ITAF + IT+LL DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+
Sbjct: 190 FITAFLLLLSLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILII 249
Query: 717 PGFGIISHIIS 749
PGFGI+SHI+S
Sbjct: 250 PGFGIVSHIVS 260
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 230 bits (562), Expect = 3e-59
Identities = 126/219 (57%), Positives = 146/219 (66%)
Frame = -1
Query: 676 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 497
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 496 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 317
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 316 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIV 137
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 136 L*I*SSPINDPGFPNSARIKSLKDVPIIPDQITKIKYNV 20
L I S PI PG PNSARIKSL DVP +P K+KYNV
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPKMKYNV 217
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 229 bits (561), Expect = 4e-59
Identities = 121/255 (47%), Positives = 149/255 (58%), Gaps = 1/255 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXX 179
N KDI LY IF + SG++GT+ +LIR EL PG I D+Q+YN+I+T+H
Sbjct: 37 NAKDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFM 96
Query: 180 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 359
N L+P+++G PD+AFPR+NN+ + I+ENG GTG T+Y
Sbjct: 97 VMPALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLY 156
Query: 360 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 539
PPLS +H VDL IF LHL+GISS +L LF AV
Sbjct: 157 PPLSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVV 216
Query: 540 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 719
ITA A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI+P
Sbjct: 217 ITAVLLLLSLPVLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILIIP 276
Query: 720 GFGIISHIISQERGK 764
GFGIIS +IS K
Sbjct: 277 GFGIISTVISANSNK 291
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 223 bits (546), Expect = 3e-57
Identities = 119/218 (54%), Positives = 134/218 (61%)
Frame = +3
Query: 24 LYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXX 203
LY I I SG+IGT+L LLIR ELG PGS IG+DQ+YN +VTAHA
Sbjct: 1 LYLILGIWSGLIGTALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGG 60
Query: 204 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 383
N LVPL+LGAPD+AFPR+NN+ F VE+GAGTG TVYPPLS N A
Sbjct: 61 FGNWLVPLMLGAPDMAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTA 120
Query: 384 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 563
H G SVDLAIFSLHLAG+SS + + LFV +V ITA
Sbjct: 121 HAGPSVDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLL 180
Query: 564 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 677
AGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 181 SLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 220 bits (537), Expect = 4e-56
Identities = 116/251 (46%), Positives = 138/251 (54%), Gaps = 2/251 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
NHK IG LY F + +G + L +L+R EL PG L G+ YN I T H
Sbjct: 13 NHKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFV 72
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N VP+++GAPD++FPR+NN F E G GTG TV
Sbjct: 73 VVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTV 132
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLSS +H G SVDL IFS HL GI S LPLFV +V
Sbjct: 133 YPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSV 192
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
+T+F A AIT+LL DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILIL
Sbjct: 193 AVTSFLVIVAIPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILIL 252
Query: 717 PGFGIISHIIS 749
PGFG++SHII+
Sbjct: 253 PGFGLVSHIIA 263
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 215 bits (526), Expect = 8e-55
Identities = 121/259 (46%), Positives = 149/259 (57%), Gaps = 5/259 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXX 179
N KDIGTLY IF + SG++GT+ +LIR EL PG I ++Q+YN+I+TAHA
Sbjct: 39 NAKDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFM 98
Query: 180 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV- 356
N L+PL++G PD+AFPR+NNI F I+E G GTG T+
Sbjct: 99 VMPALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLL 158
Query: 357 ---YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 527
YPPLS +H G SVDLAIF+LHL+G+SS +L LF
Sbjct: 159 KDKYPPLSGLQSHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALFG 218
Query: 528 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYI 707
A + IT++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYI
Sbjct: 219 WATWSSRSRYFL-------GITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYI 271
Query: 708 LILPGFGIISHIISQERGK 764
LI+PGFGIIS IS K
Sbjct: 272 LIIPGFGIISTTISSSSNK 290
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 215 bits (525), Expect = 1e-54
Identities = 116/227 (51%), Positives = 136/227 (59%), Gaps = 2/227 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
N KDIGTLY IF + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 9 NAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFF 68
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV
Sbjct: 69 MVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTV 128
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLS +H G SVDLAIFSLHL+GISS + +LPLFV A+
Sbjct: 129 YPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAI 188
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 677
+TA AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 189 FVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 207 bits (506), Expect = 2e-52
Identities = 124/269 (46%), Positives = 151/269 (56%), Gaps = 20/269 (7%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPG-------SLIGD------DQIY--- 134
NHKDIGTLY IF I +GIIG ++ L+RAEL PG + D DQ Y
Sbjct: 35 NHKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLW 94
Query: 135 NTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXX 314
N ++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 95 NVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALLLG 154
Query: 315 XXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 482
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 155 STFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILN 213
Query: 483 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 662
+ ++PLFV +V +TAF A AIT+LLTDRN T+F+D AGGGDP L
Sbjct: 214 MRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDPEL 273
Query: 663 YQHLF*FFGHPEVYILILPGFGIISHIIS 749
YQHLF FFGHPEVYI+ILPGFGIIS I+S
Sbjct: 274 YQHLFWFFGHPEVYIMILPGFGIISQIVS 302
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 205 bits (501), Expect = 8e-52
Identities = 107/250 (42%), Positives = 148/250 (59%), Gaps = 2/250 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXX 176
N ++I LY IF + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 27 NCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFY 86
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N LVPL +G+ D AFPRINN+ F +++ G G+G T+
Sbjct: 87 LVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTL 146
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLFV +V
Sbjct: 147 YPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSV 206
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
ITA A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+
Sbjct: 207 LITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIV 266
Query: 717 PGFGIISHII 746
P FG++S I+
Sbjct: 267 PVFGVVSQIV 276
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 205 bits (501), Expect = 8e-52
Identities = 107/250 (42%), Positives = 148/250 (59%), Gaps = 2/250 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXX 176
N ++I LY IF + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 27 NCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFY 86
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N LVPL +G+ D AFPRINN+ F +++ G G+G T+
Sbjct: 87 LVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTL 146
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLFV +V
Sbjct: 147 YPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSV 206
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
ITA A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+
Sbjct: 207 LITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIV 266
Query: 717 PGFGIISHII 746
P FG++S I+
Sbjct: 267 PVFGVVSQIV 276
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 203 bits (495), Expect = 4e-51
Identities = 110/211 (52%), Positives = 127/211 (60%)
Frame = +3
Query: 6 HKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 185
HKDIGTLY IF +G++GT+L LLIRAEL PG+L+GDDQIYN IVTAHA
Sbjct: 1 HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60
Query: 186 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 365
N L+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPP
Sbjct: 61 PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120
Query: 366 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 545
L+ N+AH G SVDL IFSLHLAGISS S Q PLFV AV IT
Sbjct: 121 LAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLIT 180
Query: 546 AFXXXXXXXXXAGAITILLTDRNLNTSFFDP 638
A A IT+LLTDRNLNT+FFDP
Sbjct: 181 AVLLLLSLPVLAAGITMLLTDRNLNTTFFDP 211
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 200 bits (488), Expect = 3e-50
Identities = 111/240 (46%), Positives = 137/240 (57%), Gaps = 2/240 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
N KDI LYF+ I SG+ GT++ L+IR EL PGS L G+ Q++N +V HA
Sbjct: 10 NAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFF 69
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N L+PL++GA D AFPRINNI F +VE+GAGTG TV
Sbjct: 70 LVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTV 129
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLSS AH G SVDLAIF+LHL ISS + +LPLFV ++
Sbjct: 130 YPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSI 189
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
ITAF + IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG I++L
Sbjct: 190 FITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 192 bits (467), Expect = 1e-47
Identities = 104/231 (45%), Positives = 132/231 (57%), Gaps = 2/231 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
N KDI LYF+ + SG+ GT++ L+IR EL PG L G++Q++N +V HA
Sbjct: 10 NAKDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFF 69
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N ++PL++GA D AFPRINNI F +VE+GAGTG TV
Sbjct: 70 MVMPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTV 129
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPL+S AH G SVDLAIF+LH+ ISS + +LPLFV A+
Sbjct: 130 YPPLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAI 189
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 689
ITA + +T+LL DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 190 LITAVLLLLTLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 186 bits (453), Expect = 5e-46
Identities = 105/240 (43%), Positives = 132/240 (55%), Gaps = 2/240 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
N KDI LYFIF + S +IGT L +IR EL N GS L G+ Q +N ++TAHA
Sbjct: 15 NAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFF 74
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV
Sbjct: 75 FVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTV 134
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
Y PL+ +H G +VDLAIFSLHL+G SS ++ +PLF AV
Sbjct: 135 YFPLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAV 194
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
TA A +T+ + DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 195 LFTAILLLLSLPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 184 bits (449), Expect = 2e-45
Identities = 92/224 (41%), Positives = 128/224 (57%), Gaps = 2/224 (0%)
Frame = +3
Query: 84 RAELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 257
+A LG L G D ++N ++T H N +PL++GAPD+AFP
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
Query: 258 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 437
R+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G
Sbjct: 202 RLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGA 261
Query: 438 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 617
SS + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 262 SSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNF 321
Query: 618 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 749
T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP FG+ISHI++
Sbjct: 322 GTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVISHIVA 365
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 182 bits (442), Expect = 1e-44
Identities = 97/255 (38%), Positives = 135/255 (52%), Gaps = 1/255 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NHKDIGT+Y + SG+ G SL +R EL +PG + +Y++I+T HA
Sbjct: 13 NHKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFV 72
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N +PL++ D++ PR+NN+ + G G G T+YP
Sbjct: 73 MPTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYP 132
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVG 539
PLS++ G +DLA+FSLH+AG+SS F L P+ + +
Sbjct: 133 PLSNSEFMDGLPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLF 192
Query: 540 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 719
T+ A +T+LL DR+ +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP
Sbjct: 193 GTSILLVTSVPVLAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILILP 252
Query: 720 GFGIISHIISQERGK 764
FG+ISHI+ + K
Sbjct: 253 AFGVISHILCRSSAK 267
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 176 bits (429), Expect = 4e-43
Identities = 97/242 (40%), Positives = 137/242 (56%), Gaps = 4/242 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXX 176
N ++I LY IF + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 27 NCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFY 86
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N LVPL +G+ D AFPRINN+ F +++ G G+G T+
Sbjct: 87 LVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTL 146
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLFV +V
Sbjct: 147 YPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSV 206
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYIL 710
ITA A +T+LL DRN NTSFF +GGGDP+LY+H+F FFG P + I+
Sbjct: 207 LITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIII 266
Query: 711 IL 716
I+
Sbjct: 267 II 268
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 176 bits (428), Expect = 6e-43
Identities = 95/250 (38%), Positives = 128/250 (51%), Gaps = 2/250 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
NHK IGT Y + +G+ G+ L +LIR EL +PG G Q+YN+++T H
Sbjct: 20 NHKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFF 79
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N ++PL+LGAP++AFPR+N + F + G G+ T
Sbjct: 80 LVMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTF 139
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLS S+D I LH GI S + DQ+ +FV
Sbjct: 140 YPPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTS 198
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
+T+F AG++ LL DRN NTSF+D GG+P+LYQHLF FFGHPEVY++IL
Sbjct: 199 YLTSFLLVLSVPVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIIL 258
Query: 717 PGFGIISHII 746
P FGIIS +
Sbjct: 259 PVFGIISEAV 268
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 175 bits (426), Expect = 1e-42
Identities = 96/250 (38%), Positives = 125/250 (50%), Gaps = 2/250 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXX 176
+HK IG Y + I SG +G L IR EL G L GD Q YN ++T+H
Sbjct: 12 SHKMIGLCYLLVAILSGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMVFA 71
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N +P++ G PD+ FPR+NN+ F + E G G G T+
Sbjct: 72 FIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTL 131
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YP L H + D +F++HL GISS SF LF+ A
Sbjct: 132 YPTLICIDFHSSLACDFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAA 191
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
ITA AG +T++L DRN NTSF+D GGGD IL+QH+F FFGHPEVYI++L
Sbjct: 192 LITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILL 251
Query: 717 PGFGIISHII 746
P FG+IS I+
Sbjct: 252 PVFGLISTIV 261
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 169 bits (411), Expect = 7e-41
Identities = 98/245 (40%), Positives = 137/245 (55%), Gaps = 2/245 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXX 176
N ++I LY IF + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 27 NCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFY 86
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N LVPL +G+ D AFPRINN+ F +++ G G+G T+
Sbjct: 87 LVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTL 146
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLFV +V
Sbjct: 147 YPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSV 206
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
ITA A +T+LL DRN NTSFF +GGGDP+LY+H+ F+ +P V ILI
Sbjct: 207 LITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP-VLILIW 263
Query: 717 PGFGI 731
GI
Sbjct: 264 LTSGI 268
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 159 bits (386), Expect = 7e-38
Identities = 97/247 (39%), Positives = 122/247 (49%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK IG LYF+F + G IG L LLIR L +P + +YN +VT H
Sbjct: 109 DHKRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFL 168
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N +P+ L D+ PR+N++ G G G T+YP
Sbjct: 169 MPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYP 226
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PLS G VD +FSLHLAG+SS S + V A
Sbjct: 227 PLSI-WEGSGFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLF 280
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
T+ A IT+LL DRN T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPG
Sbjct: 281 TSVLLLLSLPVLASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPG 340
Query: 723 FGIISHI 743
FGI+SHI
Sbjct: 341 FGIVSHI 347
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 159 bits (385), Expect = 9e-38
Identities = 87/156 (55%), Positives = 96/156 (61%)
Frame = +3
Query: 225 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 404
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 405 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 584
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 585 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 692
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 153 bits (371), Expect = 5e-36
Identities = 88/196 (44%), Positives = 106/196 (54%), Gaps = 2/196 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
N KDIGTLY IF + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 9 NAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFF 68
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV
Sbjct: 69 MVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTV 128
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLS +H G SVDLAIFSLHL+GISS + +LPLFV A+
Sbjct: 129 YPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAI 188
Query: 537 GITAFXXXXXXXXXAG 584
+TA AG
Sbjct: 189 FVTAILLLLSLPVLAG 204
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 152 bits (369), Expect = 8e-36
Identities = 89/253 (35%), Positives = 126/253 (49%), Gaps = 4/253 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPG-SLIGDDQI--YNTIVTAHAXXXXX 173
NHK +G Y F G G L +++R EL + +I + + YN I T H
Sbjct: 13 NHKTLGLYYLWFSFLFGSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFTIHGIIMIF 72
Query: 174 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 353
N +P++ G+P++A+PRIN+I E G GTG T
Sbjct: 73 FNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLVILSTAAEFGGGTGWT 132
Query: 354 VYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 530
+YPPLS+++ +VD+ IF L ++G++S + L +
Sbjct: 133 LYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHLRAKGLTLGILSVSTW 192
Query: 531 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 710
++ IT+ G + +LL+D + NT FFDP GDPILYQHLF FFGHPEVYIL
Sbjct: 193 SLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYIL 252
Query: 711 ILPGFGIISHIIS 749
ILP FG+ISH+IS
Sbjct: 253 ILPAFGVISHVIS 265
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 147 bits (357), Expect = 2e-34
Identities = 88/252 (34%), Positives = 124/252 (49%), Gaps = 3/252 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPG-SLIGDD--QIYNTIVTAHAXXXXX 173
NHK IG Y G+IG + +LIR EL G +I D +IYN + T H
Sbjct: 16 NHKIIGISYLWLAYWFGMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVF 75
Query: 174 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 353
N L P++LG D+ +PR+N +E G+GTG T
Sbjct: 76 FNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWT 135
Query: 354 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 533
+YPPLS+++++ G +D IF L AGI+S D++ +
Sbjct: 136 LYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWS 193
Query: 534 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 713
+ +T+F ++ DR+ NT FF+ + GDP+LYQHLF FFGHPEVYI+I
Sbjct: 194 IVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMI 253
Query: 714 LPGFGIISHIIS 749
LPGFGIIS ++S
Sbjct: 254 LPGFGIISLLLS 265
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 142 bits (345), Expect = 7e-33
Identities = 90/248 (36%), Positives = 120/248 (48%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NH D+ LYF I S ++G S LL R +L P L D +YN VT H
Sbjct: 8 NHIDVSLLYFSLGIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMVFFAA 65
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N L+P PD+ FPR+N + F ++ + A G T YP
Sbjct: 66 MPTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYP 120
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PLSS SV+ ++FSLHLAGI+S + L LF ++ +
Sbjct: 121 PLSS----LSPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVL 174
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
+ A IT++LTD++L T F+D GGDP+LYQHLF FFGHPEVY++ILP
Sbjct: 175 VSLLLVLSLPVLAVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILPV 234
Query: 723 FGIISHII 746
FG+ S I
Sbjct: 235 FGLFSSSI 242
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 137 bits (332), Expect = 2e-31
Identities = 95/263 (36%), Positives = 132/263 (50%), Gaps = 8/263 (3%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HKDIG LY F + + +G + +L+R EL +PG + + YN+++T+H
Sbjct: 93 DHKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFA 152
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXX--IVEN-GAGTG*T 353
N L+PL++GA D+AFPRIN I F I E A TG T
Sbjct: 153 TPIIAAFS-NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWT 211
Query: 354 VYPPLS-----SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 518
+Y PLS N A+ G VDL + LHL+G+S+ S+ L
Sbjct: 212 MYTPLSVGEGMGNQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWANLD 269
Query: 519 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 698
+F + + AI +LL DRN TSFF AG G IL+QHLF FFGHPE
Sbjct: 270 IFSWTILTQSGLILFAFPLLGSAIMMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPE 327
Query: 699 VYILILPGFGIISHIISQERGKK 767
VYI++LP GIIS+I+ + G++
Sbjct: 328 VYIIVLPPMGIISYILPRFSGRR 350
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 132 bits (319), Expect = 9e-30
Identities = 81/250 (32%), Positives = 118/250 (47%), Gaps = 1/250 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK IG ++ +V+ ++G LLIR EL PG I D YN T H
Sbjct: 41 DHKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFM 100
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N ++PL+LGA D+AFPR+N + ++ G TG T Y
Sbjct: 101 IPAIPAVFGNFMLPLMLGAKDVAFPRLNLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYT 159
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
P S AH +V +F + G SS ++ ++PLFV A+
Sbjct: 160 PYS---AHTTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYA 216
Query: 543 TAFXXXXXXXXXAGAITILLTDRNL-NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 719
T+ G + +L+T NL FDPA GGDP+L+QHLF F+ HP VYI++LP
Sbjct: 217 TS-CIQVLATPVIGLLLVLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLP 275
Query: 720 GFGIISHIIS 749
FG++S +++
Sbjct: 276 SFGVMSEVVA 285
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 132 bits (319), Expect = 9e-30
Identities = 82/255 (32%), Positives = 126/255 (49%), Gaps = 6/255 (2%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLI----GDDQIYNTIVTAHAXXXX 170
+HK IG LY +GI+G + +LIR EL G I + IYN +T H
Sbjct: 17 SHKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIML 76
Query: 171 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG 347
N L+P+++G +++ PR+N I F ++ +G
Sbjct: 77 FVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSG 136
Query: 348 *TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 524
T+YPPLS+ A G ++DL++ +H+ GISS +F + ++
Sbjct: 137 WTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIY 196
Query: 525 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 704
++ +T+ AIT LL DRN+N++ +D G DP+LYQHLF FFGHPEVY
Sbjct: 197 NFSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVY 254
Query: 705 ILILPGFGIISHIIS 749
++ILP FG+ S I++
Sbjct: 255 VIILPVFGLTSLILT 269
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 130 bits (313), Expect = 5e-29
Identities = 80/248 (32%), Positives = 113/248 (45%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK IG +Y + + +G LL+R +L P + +++N + T H
Sbjct: 31 DHKRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVG 90
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N VPL++GA D+AFPR+N+ F + + G Y
Sbjct: 91 MPVLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYV 149
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PLSS + VD I L + GI S S ++PLFV + +
Sbjct: 150 PLSSKAYSSLQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLM 209
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
A A+ +LL DR L ++FFDP GG +L+QH F FGHPEVYILILPG
Sbjct: 210 QAILIILALPALNSALAMLLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPG 269
Query: 723 FGIISHII 746
FG+IS +I
Sbjct: 270 FGMISEVI 277
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 126 bits (303), Expect = 8e-28
Identities = 82/257 (31%), Positives = 120/257 (46%), Gaps = 2/257 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HKDIG LY ++ + G LL+R EL + +YN ++T+H
Sbjct: 67 DHKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFLFG 126
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TV 356
N +PL++ A D+AFPRIN I F ++ A T T+
Sbjct: 127 TPMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTM 185
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
Y PLS ++ +VD+ + LHL G+S+ + L +F +
Sbjct: 186 YTPLSLQMS--SPAVDMMMLGLHLTGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTM 243
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
+ A+ +LL DRN T+FF AGG DPI +QHLF FFGHPEVY+L+L
Sbjct: 244 LTQSGLILFAFPLFGSALIMLLLDRNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVL 302
Query: 717 PGFGIISHIISQERGKK 767
P GI+S I+ + G+K
Sbjct: 303 PPMGIVSLILPKFSGRK 319
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 125 bits (301), Expect = 1e-27
Identities = 83/248 (33%), Positives = 109/248 (43%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK IG Y + IG S +R EL P ++YN ++T H
Sbjct: 26 DHKVIGIQYLVTSFLFFFIGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWI 85
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N L+PL++G D+AFPR+N + F V G T YP
Sbjct: 86 VPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYP 143
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PLS G +L I SL L G SS +PLF A+
Sbjct: 144 PLSLLSGKWGE--ELWILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLA 201
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
T+ A A+ +L D TSFF+P GGGDP++YQHLF F+ HP VYI+ILP
Sbjct: 202 TSSLILLSTPVLASALILLSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPF 261
Query: 723 FGIISHII 746
FG+IS +I
Sbjct: 262 FGVISEVI 269
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 124 bits (300), Expect = 2e-27
Identities = 67/123 (54%), Positives = 78/123 (63%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NHKD GTL IF +G+IGT+L LLIRAELG PG+L+GDDQ N IVTAHA
Sbjct: 12 NHKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMX 71
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYP
Sbjct: 72 MPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYP 131
Query: 363 PLS 371
PL+
Sbjct: 132 PLA 134
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 124 bits (299), Expect = 2e-27
Identities = 80/248 (32%), Positives = 109/248 (43%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK IG +Y + +IG LL+R +LG P + +YN + T H
Sbjct: 30 DHKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGL 89
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N +VPL++GA D+AFPR+N + V G Y
Sbjct: 90 MPLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYA 148
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+ VD I + L G++S + +++PLFV +
Sbjct: 149 PLTQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLV 208
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
AF A LL DR+ T FF P GGD +L+QHLF FFGHPEVYILILP
Sbjct: 209 VAFILIFAFPVLTVATIQLLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPT 268
Query: 723 FGIISHII 746
GIIS ++
Sbjct: 269 MGIISEVL 276
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 124 bits (298), Expect = 3e-27
Identities = 75/248 (30%), Positives = 111/248 (44%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK IG ++ + S +G LLIR EL PG I D YN + T H
Sbjct: 34 DHKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFM 93
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N L+P+++GA D+AFP++N + F +V+ GA TG T Y
Sbjct: 94 IPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSFYVYLAGAVVALFG-MVQGGADTGWTFYT 152
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
P S+ + V L F L G SS + +LPLFV ++
Sbjct: 153 PYSTTTITKVVPVLLGAFIL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYA 209
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
T+ ++ ++ + FDPA GGDP+L+QH F F+ HP VYI++LP
Sbjct: 210 TSVIQILATPVLGMSLLLVAVEHAFGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPA 269
Query: 723 FGIISHII 746
+IS ++
Sbjct: 270 MAVISEVV 277
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 124 bits (298), Expect = 3e-27
Identities = 80/249 (32%), Positives = 111/249 (44%), Gaps = 1/249 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK +G +Y I +G + LLIRAEL PG ++ +N + T H
Sbjct: 37 DHKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYG 96
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVY 359
N ++PL +GAPD+AFPR+N F + GA G T+Y
Sbjct: 97 TPIVWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMY 155
Query: 360 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 539
PLS I G D+ I + GI S + ++P+F +
Sbjct: 156 SPLSDAIHSPGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIF 215
Query: 540 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 719
+ + A +L DR L +DPA GG +L+QHLF FFGHPEVY+L LP
Sbjct: 216 VVSVLALLIFPLLLAAALGVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALP 274
Query: 720 GFGIISHII 746
FGI+S II
Sbjct: 275 FFGIVSEII 283
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 124 bits (298), Expect = 3e-27
Identities = 84/256 (32%), Positives = 116/256 (45%), Gaps = 2/256 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HKDIG LY + I +I SL LL R +L P S Y VT H
Sbjct: 20 DHKDIGLLYLVTSIAFLLIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFA 79
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVY 359
N +VPL +GA D+AFPR+N + + E+GA G T+Y
Sbjct: 80 SPFAFGLA-NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLY 138
Query: 360 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 539
PL++ I G +DLA ++ L +S + ++P+F ++
Sbjct: 139 APLTARIYTPGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSIL 198
Query: 540 ITAFXXXXXXXXXAGAITILLTDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILIL 716
T +LL DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+
Sbjct: 199 FTVILMLWAFPPLMVGGALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLF 256
Query: 717 PGFGIISHIISQERGK 764
P G ++ +IS GK
Sbjct: 257 PALGAMADVISTFSGK 272
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 122 bits (295), Expect = 7e-27
Identities = 81/250 (32%), Positives = 114/250 (45%), Gaps = 1/250 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXX 179
+HK IG Y + +G L LL+R +L P + IG D+ YN I T H
Sbjct: 28 DHKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLF 86
Query: 180 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 359
LVPL++G IAFPR+N + V+ G G Y
Sbjct: 87 AVPVMQAMAIY-LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAY 145
Query: 360 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 539
PLS G+ D+ + +S+ S D++PLFV ++
Sbjct: 146 VPLSGPQYAAGKRADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSML 205
Query: 540 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 719
+T+F A T L+ DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP
Sbjct: 206 VTSFLVILAMPAIMIASTSLILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLP 265
Query: 720 GFGIISHIIS 749
G++S I++
Sbjct: 266 AVGMVSSIVA 275
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 120 bits (288), Expect = 5e-26
Identities = 76/248 (30%), Positives = 110/248 (44%), Gaps = 3/248 (1%)
Frame = +3
Query: 9 KDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXX 188
K IG Y + ++G L +++R EL P + + D +YN + T H
Sbjct: 37 KVIGIQYIATAMLFLLVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFP 96
Query: 189 XXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP 365
N L+P ++GAPD+AFP++N F G A +G YPP
Sbjct: 97 ILNGFN-NLLIPTMIGAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPP 155
Query: 366 LS--SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 539
+S + + H L I ++ L+GISS F ++P+FV
Sbjct: 156 MSLQNPLGHFINGEFLWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAW 215
Query: 540 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 719
G +LL D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP
Sbjct: 216 AAQTIQLIGLPALTGGAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLP 275
Query: 720 GFGIISHI 743
FGI S +
Sbjct: 276 VFGIFSEL 283
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 118 bits (285), Expect = 1e-25
Identities = 67/141 (47%), Positives = 80/141 (56%)
Frame = +3
Query: 21 TLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXX 200
TLYFIF I SG++GTSL L+IR ELG PGSL+ DDQ+YN +VTAH
Sbjct: 1 TLYFIFGIWSGLLGTSLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIG 60
Query: 201 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 380
N LVPL+LGAPD+AFPR+NN+ F + G + PL
Sbjct: 61 GFGNWLVPLMLGAPDMAFPRMNNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVT 118
Query: 381 AHRGRSVDLAIFSLHLAGISS 443
G SVDLAIF LHLAG+SS
Sbjct: 119 ISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 118 bits (283), Expect = 2e-25
Identities = 80/251 (31%), Positives = 114/251 (45%), Gaps = 19/251 (7%)
Frame = +3
Query: 54 IIGTSLRLLIRAELGNP-------GSLI-GDDQI-----YNTIVTAHAXXXXXXXXXXXX 194
++G +L +LIR + G P G L+ G+ + Y I T H
Sbjct: 47 LVGGALAMLIRWQWGFPYRPVPLVGRLLFGESGVIGPATYQQIFTTHGLVMIFFAVTPVL 106
Query: 195 XXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS 371
N L+PL++GA D+AFPR+N F G AG G T Y PLS
Sbjct: 107 IGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVLASFFAPLGSAGAGWTTYTPLS 166
Query: 372 SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 551
+N+ G L + ++ + G+SS ++ +LPL + + +TA
Sbjct: 167 TNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLRAPGMTYMRLPLTIWGLWLTAI 226
Query: 552 XXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGDPILYQHLF*FFGHPEVYILIL 716
A +LL DR+ T FF GGGDPIL+QHLF FGHPEVYI+IL
Sbjct: 227 LNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGDPILWQHLFWIFGHPEVYIMIL 286
Query: 717 PGFGIISHIIS 749
P +GI+ ++S
Sbjct: 287 PAWGILGDVLS 297
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 115 bits (277), Expect = 1e-24
Identities = 70/215 (32%), Positives = 99/215 (46%)
Frame = +3
Query: 102 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 281
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 282 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 461
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 462 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 641
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 642 GGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 746
GGDP++YQ++F F+ HP VY+ +LP FG S II
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLPVFGFYSEII 214
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 114 bits (275), Expect = 2e-24
Identities = 75/249 (30%), Positives = 106/249 (42%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK +G +Y I + G L++RA+L P + D YN I T H
Sbjct: 52 DHKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMA 111
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N +VPL +GA D+AFP +NN+ F ++ G T Y
Sbjct: 112 MPFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYM 170
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+SN G + + L +AGI + + ++P+F I
Sbjct: 171 PLASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLI 230
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
T A+ +L DR FF GG P+L+ +LF +GHPEVYI+ILP
Sbjct: 231 TMVIIVFAFPVLTVALALLSFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPA 290
Query: 723 FGIISHIIS 749
FGI S IIS
Sbjct: 291 FGIFSEIIS 299
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 110 bits (264), Expect = 4e-23
Identities = 67/248 (27%), Positives = 108/248 (43%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK I LY + ++G + IR +L P + Q YN ++T H
Sbjct: 23 DHKKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAA 82
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N +VPL +GA D++FP +N + F + G T Y
Sbjct: 83 MPLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYA 141
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
LS + +G +D + L ++G+ + ++ +LPLF +
Sbjct: 142 SLS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFV 199
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
+ + +++ DR T+FF+P GG+ ++++HLF FGHPEVYILILP
Sbjct: 200 ASALILFAFPPLTVGLALMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILPA 259
Query: 723 FGIISHII 746
FGI S +I
Sbjct: 260 FGIFSEVI 267
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 109 bits (263), Expect = 6e-23
Identities = 78/249 (31%), Positives = 113/249 (45%), Gaps = 1/249 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXX 179
+H D+G LY I + +G +L LLIRAEL PG+ I D +N + T H
Sbjct: 19 HHTDVGLLYLISSLGFLFLGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLF 78
Query: 180 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 359
N VP+++ D+A+P++N I F + T
Sbjct: 79 ILPFASAVG-NYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT----- 132
Query: 360 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 539
PP S I+ G + D+ IF L + GISS S Q+PL +
Sbjct: 133 PPYSV-ISAPGPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYL 191
Query: 540 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 719
++ A A+ +LLTDR + FF+PA GGDPI Y HLF F HPEVY+L++P
Sbjct: 192 SSSLIVLVALPTFAAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIP 251
Query: 720 GFGIISHII 746
G++ ++
Sbjct: 252 AIGMMYEMV 260
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 109 bits (262), Expect = 7e-23
Identities = 70/248 (28%), Positives = 104/248 (41%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NH D+G ++ + ++G L +LIRA+L P S + YN + T H
Sbjct: 28 NHTDLGRMFLTVAVFFFVVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFA 87
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
L+P +LG+ D+AFPR+ F + +G +YP
Sbjct: 88 IPVFEGFAVY-LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYP 146
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PLSS + G + D + + IS+ S ++P+F +
Sbjct: 147 PLSSTLGAPGINSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALV 206
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
TA +L +R + FF A GGD +L+QHLF FGHPEVYI+ LP
Sbjct: 207 TAVMILTGFPPLILGSILLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPA 266
Query: 723 FGIISHII 746
G IS I+
Sbjct: 267 AGAISTIL 274
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 108 bits (260), Expect = 1e-22
Identities = 70/250 (28%), Positives = 107/250 (42%), Gaps = 1/250 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK IG +Y + + LLIR +L P + + YN I+T H
Sbjct: 23 DHKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFI 82
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVY 359
N +VPL+LGA D+A PR+N + GA G T Y
Sbjct: 83 IQAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFY 142
Query: 360 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 539
P S A VD + ++ L G SS S ++P++V +V
Sbjct: 143 YPFS---AQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVF 199
Query: 540 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 719
+ A ++L +R + S+F+PA GGDP+L+Q F F+ HP VY+++LP
Sbjct: 200 AASVLNLFSLAGLTAATLLVLLERKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLP 259
Query: 720 GFGIISHIIS 749
GI++ + S
Sbjct: 260 YLGILAEVAS 269
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 108 bits (259), Expect = 2e-22
Identities = 76/257 (29%), Positives = 115/257 (44%), Gaps = 11/257 (4%)
Frame = +3
Query: 15 IGTLYFIFVI*SGIIGTSLRLLIRAELGN--PGSLIGD---DQIYNTIVTAHAXXXXXXX 179
IG LY + I + ++ + +R + N PGS + D + +Y ++ H
Sbjct: 17 IGILYILLSIINFVLAGIAAMYMRLTIANTPPGSPVQDPFNELLYTWFMSLHGLGMLLLF 76
Query: 180 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TV 356
N LVP ++GAPD+ +PRIN + F + ++G G T+
Sbjct: 77 AMQAVAGAA-NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTL 135
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLS+ + VDL + + +AG SS + LF +V
Sbjct: 136 YPPLST--ISKSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSV 193
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEV 701
+ A +LL +R+L FF DPA GDP L+QH+F FFGHPEV
Sbjct: 194 LAASMLMVTALPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEV 253
Query: 702 YILILPGFGIISHIISQ 752
YIL+LP G++S +I +
Sbjct: 254 YILVLPAMGLVSEVIQR 270
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 107 bits (257), Expect = 3e-22
Identities = 74/251 (29%), Positives = 111/251 (44%), Gaps = 2/251 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXX 179
+HK +G LY I I + + + +LIR EL G I DD +YNT + H
Sbjct: 13 DHKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAF 72
Query: 180 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 359
N +PL++GA D+AFPR+N + + + T Y
Sbjct: 73 QIPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGY 132
Query: 360 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 539
PP S I H + FS+ L G +S +++L +FV A
Sbjct: 133 PPYSI-ITHGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT- 188
Query: 540 ITAFXXXXXXXXXAG-AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
+ AF G A+T+L D+ + T FFD A GGD + YQ+LF F+ HP VY++ L
Sbjct: 189 LAAFVLQLIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFL 248
Query: 717 PGFGIISHIIS 749
P ++ I++
Sbjct: 249 PFMAMVFEIVA 259
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 104 bits (250), Expect = 2e-21
Identities = 76/258 (29%), Positives = 112/258 (43%), Gaps = 3/258 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNP-GSLIG--DDQIYNTIVTAHAXXXXX 173
+HK IG +Y I + + G + L++R +L G G + Y+ I TAH
Sbjct: 54 DHKKIGVMYIIVAMIMLLRGFADALMMRTQLAMATGGAHGVFPPEHYDQIFTAHGVIMII 113
Query: 174 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 353
N +VPL +GA D+AFP +N++ F V N A TG
Sbjct: 114 FMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWV 172
Query: 354 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 533
YPPL+ VD I++L ++GI + +P+F
Sbjct: 173 AYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWT 232
Query: 534 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 713
GA+ +L DR L+ FF GG+ ++Y +LF +GHPEVYIL+
Sbjct: 233 CTWANVLIATSFPILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILV 292
Query: 714 LPGFGIISHIISQERGKK 767
LP FGI S ++S GK+
Sbjct: 293 LPAFGIFSEVVSTFAGKR 310
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 103 bits (248), Expect = 4e-21
Identities = 59/128 (46%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
N KDIGTLY IF + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 9 NAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFF 68
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV
Sbjct: 69 MVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTV 128
Query: 357 YPPLSSNI 380
LS I
Sbjct: 129 KCKLSQII 136
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 103 bits (247), Expect = 5e-21
Identities = 70/248 (28%), Positives = 104/248 (41%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
N +IG + + I+G L LL+R +L P + D + YN + + H
Sbjct: 35 NQTNIGMRFIVTGFIFFILGVILALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFA 94
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
++PL+LG D+ FPR+N + ++ G YP
Sbjct: 95 IPVMEGFAVY-IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYP 153
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+ G +D + IS+ S +++P+FV AV +
Sbjct: 154 PLAGASFSPGLGLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLV 213
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
+F A +L DR FF A GDPIL+QHLF FFGHPEVYI+ +P
Sbjct: 214 MSFMIVFALPPLVIASLMLALDRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPA 272
Query: 723 FGIISHII 746
G++S II
Sbjct: 273 LGMVSSII 280
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 101 bits (243), Expect = 1e-20
Identities = 68/248 (27%), Positives = 105/248 (42%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NH D+G ++ + +IG L +LIRA+L +P S + Y + T H
Sbjct: 28 NHTDLGRMFLGASVVFFLIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFA 87
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
L+P +LG+ D+A+PR++ F + +G +YP
Sbjct: 88 IPMFEGLTIY-LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYP 146
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+S + G + D + + IS+ S D++P++ +
Sbjct: 147 PLASTLGSPGINSDFWLLGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALV 206
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
TA +L +R FF A GGD +L+QHLF FGHPEVYI+ LP
Sbjct: 207 TATMILTGFPPLILGSILLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPA 266
Query: 723 FGIISHII 746
G IS I+
Sbjct: 267 AGAISTIL 274
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 101 bits (242), Expect = 2e-20
Identities = 75/260 (28%), Positives = 111/260 (42%), Gaps = 5/260 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAEL-----GNPGSLIGDDQIYNTIVTAHAXXX 167
+HK IG +Y I + + G + +++R +L G+ G L + Y+ I TAH
Sbjct: 53 DHKKIGVMYIIVAMVMLLRGFADAIMMRTQLAAATGGSEGYL--PPEHYDQIFTAHGVIM 110
Query: 168 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 347
N VPL +GA D+AFP +N++ F V A TG
Sbjct: 111 IIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTG 169
Query: 348 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 527
YPPL+ G VD I++L L+G+ + +P+F
Sbjct: 170 WVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFT 229
Query: 528 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYI 707
A+ +L DR L+ F GG+P++Y +LF +GHPEVYI
Sbjct: 230 WTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYI 289
Query: 708 LILPGFGIISHIISQERGKK 767
LILP FG+ S + S GK+
Sbjct: 290 LILPAFGVFSEVTSTFAGKR 309
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 101 bits (242), Expect = 2e-20
Identities = 79/253 (31%), Positives = 108/253 (42%), Gaps = 15/253 (5%)
Frame = +3
Query: 51 GIIGTSLRLLIRAELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPL 227
G++ L L+R +LG PG+ D Y +T H N L+PL
Sbjct: 53 GLVALVLSWLMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPL 112
Query: 228 ILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRS 398
++GA D+ FP +N + + V G G G T+YPP + S +
Sbjct: 113 MVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWG 172
Query: 399 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXX 575
+ L + SL L I + +LPL V + T
Sbjct: 173 IVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPAL 232
Query: 576 XAGAITILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILPGF 725
G++ +LL DR L TSFF P GGG P+L+QHLF FFGHPEVYI+ LP F
Sbjct: 233 FVGSVMLLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPAF 291
Query: 726 GIISHIISQERGK 764
GI+S +IS K
Sbjct: 292 GIVSDLISTHARK 304
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 101 bits (241), Expect = 3e-20
Identities = 81/278 (29%), Positives = 120/278 (43%), Gaps = 29/278 (10%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS---LIGD-----------DQIYNT 140
+HK IG + + ++G L L IR +L P S +IG + Y
Sbjct: 31 DHKVIGIQFLFSTLIWFVVGGMLALGIRWQLAWPWSDMPIIGGMLFPEQGGQIAPEFYTV 90
Query: 141 IVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXX 320
+VT HA N L+PL++GA D+AFP +N + +
Sbjct: 91 LVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFFFGGAF 150
Query: 321 IVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 488
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 151 FCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTTIIQMR 210
Query: 489 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP---------- 638
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 211 APGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVVNNSPM 270
Query: 639 -AGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 749
AGGG P+L+QHLF F+ HP VYI+ILP G++S I++
Sbjct: 271 AAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMVSDILA 308
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 100 bits (240), Expect = 3e-20
Identities = 80/227 (35%), Positives = 92/227 (40%), Gaps = 1/227 (0%)
Frame = +3
Query: 6 HKDIGTLYFIFVI*SGII-GTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
HKD GTL F F S G L R L G +IG QI VTA A
Sbjct: 1 HKDXGTLXFXFXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFV 60
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
L PL +GAP +A PR+ N+ F + G G VYP
Sbjct: 61 MPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYP 120
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
P SS +AH +VDL IF LHLAGISS ++ LF
Sbjct: 121 PXSSGLAHSSGAVDLGIFXLHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVX 180
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 683
A AIT+L R N SFF P G P + F F
Sbjct: 181 XXXXLILSXPVLAAAITMLXXXRXXNXSFFXPXXXGXPXXFPTFFXF 227
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 99.5 bits (237), Expect = 8e-20
Identities = 67/254 (26%), Positives = 106/254 (41%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+H+ +G + I +I LL+R +L P + + YN + T H
Sbjct: 54 SHRAVGKRFLITGFIFFLIAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFLFA 113
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
L+PL++GA D+ FPR+ + + + G +Y
Sbjct: 114 IPMLEGFAVY-LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYV 172
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PLS++ G S D + + LA I+S S ++P+ + +
Sbjct: 173 PLSTSAYTEGLSADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLA 232
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
TAF +L +R L FFD GGDP+L+QHLF FGHPEVYI+ LP
Sbjct: 233 TAFMIAIAFPPLIIGSILLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPA 292
Query: 723 FGIISHIISQERGK 764
G+++ ++ GK
Sbjct: 293 AGMVATMLPTFVGK 306
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 99.1 bits (236), Expect = 1e-19
Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXX 176
NHKDIGTLY IF +G++GT +LIR EL PG+ I G+ Q+YN ++TAHA
Sbjct: 13 NHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFF 72
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 73 MVMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 98.7 bits (235), Expect = 1e-19
Identities = 70/252 (27%), Positives = 105/252 (41%), Gaps = 4/252 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK IG +Y + ++G ++R +L PG + + +N + T HA
Sbjct: 28 DHKRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGV 87
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG* 350
N +PL++GA D+AFPR+N + ++ G G
Sbjct: 88 MPLLSAFM-NYFLPLMIGARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGW 146
Query: 351 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 530
Y L+S G D L L GI + + ++P+FV
Sbjct: 147 FGYANLTSVQFTSGLGPDFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVW 206
Query: 531 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 710
+T+ A+ +L+ DR +FF+ GG + YQHLF FGHPEVYIL
Sbjct: 207 TTLVTSAIIIFAFPSVTVALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYIL 266
Query: 711 ILPGFGIISHII 746
ILP GIIS +I
Sbjct: 267 ILPAMGIISEVI 278
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 98.7 bits (235), Expect = 1e-19
Identities = 74/253 (29%), Positives = 108/253 (42%), Gaps = 5/253 (1%)
Frame = +3
Query: 3 NHKDIGTLY----FIFVI*SGIIGTSLRLLIRAELGNP-GSLIGDDQIYNTIVTAHAXXX 167
N++ IG LY F+F I +GI+G L++R +L P L+G D YN I T H
Sbjct: 38 NNQVIGILYVGAAFLFFILAGILG----LIMRTQLAVPENDLVGQD-FYNQIFTVHGTTM 92
Query: 168 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 347
L+P +L A D+ FPR++ + G
Sbjct: 93 MFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGG 151
Query: 348 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 527
+YPPL+ G + D + + IS+ S ++P+F
Sbjct: 152 WFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFA 211
Query: 528 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYI 707
A+ I A A +L +R+ FF GGDP+L+QHLF FFGHPEVYI
Sbjct: 212 WAMLIFAAMIMIAFPAVILATMLLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYI 271
Query: 708 LILPGFGIISHII 746
+ LP G++S I+
Sbjct: 272 IFLPAAGLVSMIV 284
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 98.3 bits (234), Expect = 2e-19
Identities = 68/245 (27%), Positives = 103/245 (42%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK IG Y + ++G L++R +L P + + Y+++ T H
Sbjct: 48 DHKRIGLRYIVTAFVFLLLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYA 107
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N L PL+LG+ D+AFPR+ + + G Y
Sbjct: 108 LPVLSGFA-NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYV 166
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+S G ++D+ + L GIS+ S D+LP+ V
Sbjct: 167 PLTSLDYSAGANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLT 226
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
+ + A +L DRN T FFD A GG P+L+QHLF F HP VY+++LP
Sbjct: 227 ASVSNLVAVPSVSLAFLLLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPA 286
Query: 723 FGIIS 737
GI+S
Sbjct: 287 MGIVS 291
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 94.3 bits (224), Expect = 3e-18
Identities = 75/249 (30%), Positives = 107/249 (42%), Gaps = 1/249 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
N D+G +Y + I + IIG+ LIR +L +L D Y VT H
Sbjct: 15 NASDVGQMYIVLGIVALIIGSVNAALIRDQLSF-NNLNAVD--YYDAVTLHGIFMIFFVV 71
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N LVP ++GA D+ +P+IN + F ++ G +Y
Sbjct: 72 MPLSTGFA-NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYA 129
Query: 363 PLS-SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 539
PLS + G +L +L L+G+SS + ++PLFV
Sbjct: 130 PLSVETTVNYGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKVP--YLKMPLFVWGFF 187
Query: 540 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 719
TA + +R T FFD A GG P+L+Q LF FFGHPEVYILILP
Sbjct: 188 TTAILMIIAMPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILP 247
Query: 720 GFGIISHII 746
G++S ++
Sbjct: 248 AMGLVSELL 256
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 93.5 bits (222), Expect = 5e-18
Identities = 55/128 (42%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
N KDI LYFIF + S +IGT L +IR EL N GS L G+ Q +N ++TAHA
Sbjct: 15 NAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFF 74
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV
Sbjct: 75 FVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTV 134
Query: 357 YPPLSSNI 380
SS +
Sbjct: 135 KKICSSKM 142
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 93.1 bits (221), Expect = 7e-18
Identities = 66/249 (26%), Positives = 96/249 (38%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
+HK IG LY I I +G L L IR +L P + YN ++T HA
Sbjct: 31 DHKKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFL 90
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N +PL LG D+A PR+N G T Y
Sbjct: 91 IPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYY 150
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+ + G SV + L+ G+ S ++P+F ++
Sbjct: 151 PLTMDGNQTGVSVFMVAVILN--GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFA 208
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
T+ A + + L S F+P GG P+LYQ F F+ HP VY+++LP
Sbjct: 209 TSILQLLTLGGLTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPY 268
Query: 723 FGIISHIIS 749
GI + + S
Sbjct: 269 LGIGAEVAS 277
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 91.5 bits (217), Expect = 2e-17
Identities = 72/251 (28%), Positives = 103/251 (41%), Gaps = 2/251 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIG--DDQIYNTIVTAHAXXXXXX 176
NHK IG +Y I G + LLIR + +G + Y I TAH
Sbjct: 49 NHKKIGKIYLIISFLMMFRGLTDALLIRLQQILCYKHLGFLSNHHYCQIFTAHGDIMIFF 108
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N ++PL +G+ D+AFP +N + F I+ A TG
Sbjct: 109 VAMPMIIGIM-NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLG 167
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPPLS VD +S+ ++GI + F+++ +F+
Sbjct: 168 YPPLSEKTFSPWVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTC 227
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
+ + + DR L+T F+ GG +LY +L +GHPEVYILIL
Sbjct: 228 LCSNILILISFPILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILIL 287
Query: 717 PGFGIISHIIS 749
P FGI S IIS
Sbjct: 288 PSFGIFSEIIS 298
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 91.1 bits (216), Expect = 3e-17
Identities = 39/52 (75%), Positives = 45/52 (86%)
Frame = +3
Query: 612 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKK 767
N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+ISH+I+ GK+
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMISHVIAHYSGKR 242
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 90.6 bits (215), Expect = 4e-17
Identities = 71/256 (27%), Positives = 104/256 (40%), Gaps = 2/256 (0%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAE--LGNPGSLIGDDQIYNTIVTAHAXXXXXX 176
+HK IG +Y + + + +L+RA+ +G G + D + + + H
Sbjct: 75 DHKKIGIMYVVLALVMLTRAIAEAVLMRAQGAVGLGGGFLSSDH-FAQLFSTHGTIMIFF 133
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N +VPL +GA D+AFP +N+I +V + G
Sbjct: 134 MAMPFLTGLI-NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFG 192
Query: 357 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
YPP + + + G VD I+SL LA + S +PLF
Sbjct: 193 YPPYTETLYNPGIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTA 252
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 716
TA L DR L+ FF GG+ + + ++F FGHPEVYILIL
Sbjct: 253 LCTAIMMIFAMPPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILIL 312
Query: 717 PGFGIISHIISQERGK 764
P FG+ S I S GK
Sbjct: 313 PAFGVYSEIFSTFSGK 328
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 90.2 bits (214), Expect = 5e-17
Identities = 70/268 (26%), Positives = 106/268 (39%), Gaps = 13/268 (4%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
NHKDIG LY I + + G L LL R EL + G+ + YN V+ H
Sbjct: 21 NHKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFI 80
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
N LVPL +GA D+AFPR+N + + G T+Y
Sbjct: 81 SPFAFGFA-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYA 139
Query: 363 PLSSN--IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 536
PL++ I G + +L + + +P+F ++
Sbjct: 140 PLNTPAYIPGEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSI 199
Query: 537 GITAFXXXXXXXXXAGAITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF*F 683
+T + A+ IL +D L T++F D G +L+ HLF F
Sbjct: 200 NLTVWMMLFAFAALLAALMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWF 259
Query: 684 FGHPEVYILILPGFGIISHIISQERGKK 767
FGHPEVYI+ P G+++ G++
Sbjct: 260 FGHPEVYIVFFPALGVMAECFQTFTGRR 287
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 89.8 bits (213), Expect = 6e-17
Identities = 72/246 (29%), Positives = 106/246 (43%), Gaps = 14/246 (5%)
Frame = +3
Query: 69 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 248
LR ++ + G L + + Y +VT H N L+PL +GA D+
Sbjct: 83 LRPILGGWITEAGKL--EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDM 140
Query: 249 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIF 416
A +N + + +E G +G +YPPLS+ ++ G + + +
Sbjct: 141 ASGFMNMLSYWFFFGSSVIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLI 200
Query: 417 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 596
S+ L IS SF +LPL + A ITA A +
Sbjct: 201 SMALFIISVLLGGINYITTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALL 260
Query: 597 LLTDRNLNTSFFDP----AG------GGDPILYQHLF*FFGHPEVYILILPGFGIISHII 746
L+ DR+L TSFF AG GG P+L+QHLF F GHPEVYI+++P GI S +I
Sbjct: 261 LIFDRSLGTSFFLSEIYIAGEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPALGITSEVI 320
Query: 747 SQERGK 764
+ K
Sbjct: 321 ATNARK 326
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 87.0 bits (206), Expect = 5e-16
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 176
N KDI LYFIF I G+ GT++ ++IR EL PG+ L G+ Q++N +V HA
Sbjct: 10 NAKDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFF 69
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 356
N L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 70 LVMPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 86.2 bits (204), Expect = 8e-16
Identities = 66/252 (26%), Positives = 104/252 (41%), Gaps = 4/252 (1%)
Frame = +3
Query: 3 NHKDIGTLY----FIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXX 170
N+ IG Y F+F + +GI+ L++R +L + +YN + T H
Sbjct: 97 NNNYIGVFYVGAAFLFFVLAGIVA----LMMRTQLAVAENDFIGPALYNQLFTMHGTVMM 152
Query: 171 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 350
L+P +LGA D+ FPR++ F V G
Sbjct: 153 FLFAVPAVEAMGIL-LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGW 211
Query: 351 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 530
+ PPL++ G + D + + IS+ + ++P+F
Sbjct: 212 FMNPPLTTETYSPGYNADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAW 271
Query: 531 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 710
A+ + A A +L +R + FF GGDP+L+QHLF FFGHPEVYI+
Sbjct: 272 AMLVFALMIVFAFPAVILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYII 331
Query: 711 ILPGFGIISHII 746
LP G++S I+
Sbjct: 332 FLPAAGMVSMIV 343
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 83.8 bits (198), Expect = 4e-15
Identities = 58/248 (23%), Positives = 98/248 (39%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 182
N+ ++G Y + + + L +L+R +L PG+ +N T H
Sbjct: 56 NNSEVGVWYALTALAFMLCAGVLAVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFA 115
Query: 183 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 362
L+P +LGA D+ FPR++ + + + +G +YP
Sbjct: 116 VPMFEAISII-LLPALLGARDLPFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYP 174
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL++ G D+ + L ++S + +PL+ V +
Sbjct: 175 PLATQ--DEGLGSDIWLLGLSFIEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLV 232
Query: 543 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 722
+ +R + FFDP GGDP+L+QHLF FGHPEVYI+ LP
Sbjct: 233 VGGMILFAFPPLIAGDLLFEMERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLPL 292
Query: 723 FGIISHII 746
+ + I+
Sbjct: 293 IALAAMIV 300
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 83.4 bits (197), Expect = 6e-15
Identities = 80/279 (28%), Positives = 114/279 (40%), Gaps = 31/279 (11%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLI------------GD---DQIYN 137
+HK IG Y+ + + IG L L+R L P S I GD + Y
Sbjct: 28 DHKVIGLQYYGLAVVAVFIGMVLSWLMRIHLVWPNSPIPGLHLLSKNGAPGDVMTPEYYL 87
Query: 138 TIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXX 317
+++T H N +P+ +GA D+AFPR N + F
Sbjct: 88 SLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMSFWTTFAAFCVLIAA 147
Query: 318 XIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GISSXXXXXXXXXXXXX 482
+ +G +G T Y LS+ A G + ++ + +A I+S
Sbjct: 148 FFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIASLLGSLNFIATTLD 207
Query: 483 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG------ 644
S ++P+ A IT+ A +L DR TSFF P+G
Sbjct: 208 LRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAGTSFFIPSGLVFNDH 267
Query: 645 -----GGDPILYQHLF*FFGHPEVYILILPGFGIISHII 746
GG +L+QHLF FFGHPEVYI ILP GI+SHI+
Sbjct: 268 VIPHGGGSALLWQHLFWFFGHPEVYIAILPAMGIVSHIL 306
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 82.6 bits (195), Expect = 1e-14
Identities = 73/260 (28%), Positives = 107/260 (41%), Gaps = 11/260 (4%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPG------SLIG----DDQIYNTIVTA 152
NHK IG LY + + I G + LL+R +L P S+ D YN +VT
Sbjct: 31 NHKQIGLLYILTSLFFFIGGGVMALLMRVQLAIPRYDLVKYSIFSGRFLDALQYNQLVTI 90
Query: 153 HAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVEN 332
H L+PL +G+ D+ +PR+N + + +
Sbjct: 91 HGLTMLIWFLGPLGTGFGIY-LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPG 149
Query: 333 G-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFD 509
G TG TVY PLSS D A ++ L GI +
Sbjct: 150 GNLDTGWTVYEPLSSFKFTPYLGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMM 209
Query: 510 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 689
LPLFV AV A G +LL ++ S++ GG +++++LF +FG
Sbjct: 210 NLPLFVWAVFWVAAISWFVFPEITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFG 268
Query: 690 HPEVYILILPGFGIISHIIS 749
HPEVY+L+LPG G + +S
Sbjct: 269 HPEVYLLLLPGTGAMFDYLS 288
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 82.2 bits (194), Expect = 1e-14
Identities = 50/144 (34%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Frame = +3
Query: 345 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 515
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 516 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 695
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 696 EVYILILPGFGIISHIISQERGKK 767
EVY+LI+P FG I+ I+ ++
Sbjct: 403 EVYVLIIPTFGFINMIVPHNNTRR 426
Score = 58.0 bits (134), Expect = 2e-07
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXX 176
NHK I Y F + +G+ G +L +IR EL +P S GD Y +VTAH
Sbjct: 59 NHKRIAINYLYFSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAHGLIMVFF 118
Query: 177 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 278
N L+P +G+ D+A+PR+N+I F
Sbjct: 119 VVVPILFGGFANFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 81.0 bits (191), Expect = 3e-14
Identities = 37/52 (71%), Positives = 38/52 (73%)
Frame = +2
Query: 611 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKK 766
K KYIIF S W F+STFILIFWT SLYFNFT IWYNFSYYF K KK
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNFSYYFPSKSKK 58
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 80.6 bits (190), Expect = 4e-14
Identities = 68/277 (24%), Positives = 108/277 (38%), Gaps = 28/277 (10%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS---LIG-----------DDQIYNT 140
+HK I + + I+G +L L +R +L P ++G + Y
Sbjct: 35 DHKIIAIQFLFTTLLMMIVGGALALAVRWQLAFPWESMPIVGPWLFAAEGGQISPEFYTM 94
Query: 141 IVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXX 320
+ T HA N L+PL++GA D+AFP++N + +
Sbjct: 95 LFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIACFGMSF 154
Query: 321 IVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 491
G G T YP L+ G + + + G SS
Sbjct: 155 KYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTIINMRA 214
Query: 492 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG--------- 644
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 215 PGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVINNAAPT 274
Query: 645 --GGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 749
GG P+L+QHLF F+ HP VYI++LP G++S ++S
Sbjct: 275 VGGGQPLLWQHLFWFYSHPAVYIMLLPIMGMVSDMLS 311
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 80.2 bits (189), Expect = 5e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 225 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 404
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 405 LAIFS 419
LAI+S
Sbjct: 61 LAIYS 65
Score = 59.7 bits (138), Expect = 8e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +2
Query: 524 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 691
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 72.9 bits (171), Expect = 8e-12
Identities = 50/179 (27%), Positives = 76/179 (42%)
Frame = +3
Query: 210 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 389
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 390 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 569
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 570 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 746
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP FG IS II
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFISEII 321
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 70.9 bits (166), Expect = 3e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +3
Query: 363 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 542
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 543 TAFXXXXXXXXXAGAITILLTDR 611
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.1 bits (77), Expect = 1.9
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 197 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 322
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 59.3 bits (137), Expect = 1e-07
Identities = 27/45 (60%), Positives = 36/45 (80%)
Frame = +3
Query: 24 LYFIFVI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHA 158
LYFIF I SG+IG+S+ +LIR EL GS++ +QIYNT+VT+HA
Sbjct: 2 LYFIFAIWSGLIGSSMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46
Score = 37.1 bits (82), Expect = 0.48
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +3
Query: 390 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 569
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 570 XXXAGAITILLTDRNLNT 623
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 321 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 443
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 58.4 bits (135), Expect = 2e-07
Identities = 31/70 (44%), Positives = 40/70 (57%)
Frame = +3
Query: 507 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 686
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 687 GHPEVYILIL 716
GH +V LIL
Sbjct: 72 GHTDVLFLIL 81
>UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2;
Yarrowia lipolytica|Rep: Cytochrome c oxidase subunit I
- Yarrowia lipolytica (Candida lipolytica)
Length = 399
Score = 58.0 bits (134), Expect = 2e-07
Identities = 29/54 (53%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHA 158
N KDI LYFIF + S +IGT L +IR EL N GS L G+ Q +N ++TAHA
Sbjct: 15 NAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHA 68
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 55.2 bits (127), Expect = 2e-06
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +3
Query: 681 FFGHPEVYILILPGFGIISHIISQERGKK 767
FFGHPEVYILILPGFG+ISHI++ GKK
Sbjct: 2 FFGHPEVYILILPGFGMISHIVAYYSGKK 30
>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 854
Score = 55.2 bits (127), Expect = 2e-06
Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHA 158
N KDI LYF+ I SG+ GT++ L+IR EL PGS L G+ Q++N +V HA
Sbjct: 10 NAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
(Liverwort)
Length = 802
Score = 54.0 bits (124), Expect = 4e-06
Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYN 137
NHKDIGTLY IF +G++GT +LIR EL PG+ I G+ Q+YN
Sbjct: 13 NHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|Rep:
Maturase-like protein - Pellia epiphylla
Length = 843
Score = 51.2 bits (117), Expect = 3e-05
Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYN 137
NHKDIGT Y IF +G++GT +LIR EL PG+ I G+ Q+YN
Sbjct: 13 NHKDIGTPYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
precursor (DNA endonuclease I- SceIII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI3 precursor (DNA
endonuclease I- SceIII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 403
Score = 50.4 bits (115), Expect = 5e-05
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIV 146
N KDI LYF+ I SG+ GT++ L+IR EL PGS L G+ Q++N +V
Sbjct: 10 NAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59
>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
Harmonia axyridis (Multicolored Asian lady beetle)
Length = 193
Score = 49.2 bits (112), Expect = 1e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +2
Query: 668 TFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKK 766
+ ++IFW+S SLYFN IWYNF YY+T K K
Sbjct: 2 SLVMIFWSSSSLYFNSPSIWYNFPYYYTSKSGK 34
>UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2;
Bruchidius|Rep: Cytochrome c oxidase subunit I -
Bruchidius aff. varius GLK-2003
Length = 339
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +3
Query: 696 EVYILILPGFGIISHIISQERGKK 767
EVYILILPGFG+ISHIISQE GKK
Sbjct: 155 EVYILILPGFGMISHIISQESGKK 178
>UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=1;
Saccharomyces cerevisiae|Rep: Putative COX1/OXI3 intron
1 protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 834
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +3
Query: 3 NHKDIGTLYFIFVI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTA 152
N KDI LYF+ I SG+ GT++ L+IR EL PGS L G+ Q++N T+
Sbjct: 10 NAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTS 61
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.0 bits (109), Expect = 3e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +2
Query: 527 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 679
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 46.4 bits (105), Expect = 8e-04
Identities = 41/177 (23%), Positives = 65/177 (36%)
Frame = +3
Query: 216 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 395
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 396 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 575
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 576 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 746
+ L+D + F+ G P+ Y F F HPEVY+ ILP F I I+
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAIWLEIL 351
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +3
Query: 681 FFGHPEVYILILPGFGIISHI 743
FFGHPEVY+LILP FGI+SHI
Sbjct: 1 FFGHPEVYVLILPVFGIVSHI 21
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 44.0 bits (99), Expect = 0.004
Identities = 34/123 (27%), Positives = 41/123 (33%)
Frame = +2
Query: 254 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSX 433
P NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138
Query: 434 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSK 613
CM +YS + S+YNI K
Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPK 198
Query: 614 LKY 622
KY
Sbjct: 199 PKY 201
>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
Roseiflexus sp. RS-1
Length = 561
Score = 35.5 bits (78), Expect = 1.5
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 645 GGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERG 761
G DP+L + LF F GHP VY +LP + + + Q+ G
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAYISWYNFVPQQAG 262
>UniRef50_Q2Y5N3 Cluster: Integral membrane proteins containing
uncharacterized repeats-like precursor; n=3;
Nitrosospira multiformis ATCC 25196|Rep: Integral
membrane proteins containing uncharacterized
repeats-like precursor - Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849)
Length = 433
Score = 34.7 bits (76), Expect = 2.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 693 PEVYILILPGFGIISHIISQERGKK 767
PE+Y LILPG G++ I Q++ KK
Sbjct: 407 PEIYALILPGLGLVGFIARQKKAKK 431
>UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 592
Score = 34.7 bits (76), Expect = 2.6
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 651 DPILYQHLF*FFGHPEVYILILPGFGIISHI---ISQERGK 764
+P+L + LF FFGHP VY +LP + + I I E+GK
Sbjct: 209 NPLLARTLFWFFGHPVVYFWLLPAYVALYTILPKIVSEKGK 249
>UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1;
Pichia guilliermondii|Rep: Cytochrome c oxidase subunit
1 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 168
Score = 34.3 bits (75), Expect = 3.4
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 48 SGIIGTSLRLLIRAEL--GNPGSLIGDDQIYNTIVTAHA 158
+ ++GT + ++IR EL GN G++Q YN ++T HA
Sbjct: 3 ASMVGTGMSVIIRMELSSGNSQFFHGNNQAYNVLITGHA 41
>UniRef50_P98004 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Cytochrome aa3 subunit
1) (Oxidase aa(3) subunit 1); n=5; Sulfolobaceae|Rep:
Quinol oxidase subunit 1 (EC 1.10.3.-) (Quinol oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Oxidase aa(3)
subunit 1) - Sulfolobus acidocaldarius
Length = 517
Score = 33.9 bits (74), Expect = 4.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 657 ILYQHLF*FFGHPEVYILILPGFGIISHIISQERGK 764
+L+ LF F+GHP VY + P FG + + I Q G+
Sbjct: 224 LLWAILFWFYGHPVVYYVPFPLFGALYYYIPQYAGR 259
>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
- Locustacarus buchneri
Length = 185
Score = 33.1 bits (72), Expect = 7.8
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +2
Query: 539 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 718
+Y+ TT S S +N N SKL++I+ S PN I ILI T L+ N T
Sbjct: 94 NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153
Query: 719 RI 724
I
Sbjct: 154 SI 155
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,522,609
Number of Sequences: 1657284
Number of extensions: 10785389
Number of successful extensions: 25122
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 23169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24802
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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