Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0357
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    28   0.56 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.9  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   3.9  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   3.9  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   9.1  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    24   9.1  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    24   9.1  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    24   9.1  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    24   9.1  

>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 0.56
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 33  LASRESSLGGDQDVRVAGLPG 95
           LA++  + GGD+++RVA  PG
Sbjct: 41  LAAKNVNAGGDEEIRVANYPG 61


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 334 ATPPRHASTPQGLGSWRIFQLSQAPKIDRIYFHSCTSRSSQWHSSIPFQTQFSSK 170
           A+   H+S+     S    + S AP +   ++H+ TS  S  HSS    +  SSK
Sbjct: 394 ASSSSHSSSLSSHKSSSSSKSSSAP-VSSAFYHNSTSSRSSSHSSSHSLSSLSSK 447


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 220 SSQWHSSIPFQTQFSSKLGICRQAEPQRPADCI 122
           SS  H S P     S+ + +C++++P     CI
Sbjct: 85  SSGGHPSPPVHIYMSALIKVCKKSKPHLQTHCI 117


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 97  NPGSPATRTSWSPPRLLSLDA-RAPG 23
           NP  P +RTSW  P+     +  APG
Sbjct: 765 NPAFPQSRTSWMMPQSFDTSSLNAPG 790


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 141 CGSA*RQIPSFDENCVWNG 197
           CG+  R I  +D +C W G
Sbjct: 416 CGACKRCINRYDHHCPWTG 434


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -3

Query: 374 SVKFFFAVAPAGLCHSTQACFNSSGSWLVENISVISGSKDRSHLLSFLYEQ 222
           +V+ F A+ P  LC          G ++   I  +SG +D       L EQ
Sbjct: 25  TVQLFVALDPDALCACKLLSTLLKGDFISHKIRPVSGYRDLEQANKTLLEQ 75


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 4   EKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMF 117
           E +I+T  EL   EK  + +     W D  DF+    F
Sbjct: 694 ETAIETFRELPCMEKPTYAQYLEQLWGDMSDFSTHLSF 731


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 250 RIYFHSCTSRSSQWHSSIPFQTQFSSKL 167
           R+Y+++  +R S W         F  KL
Sbjct: 45  RVYYYNSVTRKSVWEKPEELMNDFEKKL 72


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 133 LGVAALPDDKFQALMRTVSGMESNYATAKICSYKNESKC 249
           L VA+  DD+ QAL   V GM  N    +   +++ +KC
Sbjct: 883 LHVASARDDRNQALSYLVDGMPENDPRRE--PFESRTKC 919


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.126    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,366
Number of Sequences: 5004
Number of extensions: 33024
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)