Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0357
(379 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0160 - 1212295-1213586,1213828-1213976,1214288-1214445,121... 31 0.40
10_01_0065 + 845447-846187,846969-847193 29 1.6
07_01_1181 + 11203073-11203604,11204124-11204143 29 1.6
02_04_0213 + 20974712-20975413 28 2.8
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665... 27 3.7
11_01_0161 - 1327286-1328592,1328819-1329000,1329279-1329436,132... 27 6.5
10_01_0066 + 848523-849269,849520-849741 27 6.5
08_02_1111 + 24377268-24377444,24377543-24377630,24378072-243781... 27 6.5
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 27 6.5
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 27 6.5
05_07_0063 - 27428056-27428184,27428321-27428460,27428698-274289... 27 6.5
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 26 8.6
06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588... 26 8.6
02_03_0320 + 17677809-17677929,17678203-17678289,17678657-176787... 26 8.6
02_03_0062 + 14586152-14586461,14586792-14587075,14587807-14588079 26 8.6
>12_01_0160 -
1212295-1213586,1213828-1213976,1214288-1214445,
1214860-1215004,1215102-1215226
Length = 622
Score = 30.7 bits (66), Expect = 0.40
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 115 FKKYSQLGVAALPDDKFQALMRTVSGMESNYATAKICSYKNESKCDLSLEPEI 273
F+K G A LPDD+ + L + +G++ N T ++ K+ S C + +I
Sbjct: 428 FQKPFVGGFAILPDDEDEQLEKNDNGVKINSGTVQLTDDKDTSLCSRQTDSKI 480
>10_01_0065 + 845447-846187,846969-847193
Length = 321
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 162 IPSFDENCVWNGIELCH 212
+PSFD VW G+E CH
Sbjct: 138 LPSFDMEGVWRGMEECH 154
>07_01_1181 + 11203073-11203604,11204124-11204143
Length = 183
Score = 28.7 bits (61), Expect = 1.6
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 334 ATP-PRHASTPQGLGSWRIFQLSQAPKIDRIYFHSCTSRSSQWHSSIPFQTQFSSKLG 164
A+P PR A TP R + P S +S SS W S +P T FSS G
Sbjct: 3 ASPLPRWAPTPSPT---RPLRTPGTPSAGAGAASSSSSSSSSWRSCVPLLTTFSSVFG 57
>02_04_0213 + 20974712-20975413
Length = 233
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 1 EEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALP 153
EE+ + E R +A EE W+DF D L ++ ++ Q A P
Sbjct: 78 EEERMDQLWERDRDARAGDEERMDLLWEDFNDELLLQLRRRQQQRAAAGTP 128
>11_04_0071 - 13165019-13165082,13165345-13165428,13166325-13166524,
13166756-13170655
Length = 1415
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 298 LGSWRIFQLSQAPKIDRIYFHSCTS 224
L S IF +S +P++ + HSCTS
Sbjct: 1194 LTSLSIFAISNSPELTSLVLHSCTS 1218
>11_01_0161 -
1327286-1328592,1328819-1329000,1329279-1329436,
1329852-1329996,1330083-1330207
Length = 638
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 115 FKKYSQLGVAALPDDKFQALMRTVSGMESNYATAKICSYKNESKCDLSLEPEI 273
F+K G A LPDD+ + L + +G++ N T ++ N S C + +I
Sbjct: 445 FQKPFVGGFAILPDDEDEQLEKNDNGVKINSGTMQLTD-DNTSLCSRQTDSKI 496
>10_01_0066 + 848523-849269,849520-849741
Length = 322
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 165 PSFDENCVWNGIELCH 212
P+FD VW G+E CH
Sbjct: 141 PAFDMEGVWRGMEECH 156
>08_02_1111 +
24377268-24377444,24377543-24377630,24378072-24378157,
24378358-24378511,24378723-24378883,24378964-24379632,
24379860-24380058,24380188-24380405,24380578-24380755,
24380859-24381358
Length = 809
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 188 DTVLIKAWNLSSGRAATPS 132
D +I+ WN+S GRA+T S
Sbjct: 729 DNGMIELWNISGGRASTDS 747
>08_01_0609 +
5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 214 AKICSYKNESKCD-LSLEPEITEIFSTSQDPEELK 315
A+ +YK + + D +SL P+I E + DP+EL+
Sbjct: 844 ARAIAYKKQHEVDVISLTPDIQESPQDNIDPQELR 878
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -1
Query: 319 HASTPQGLGSWRIFQLSQAPKIDRIYFHSCTSRSSQW 209
H S QGL + F PK D HS T SS+W
Sbjct: 147 HGSNVQGLETTATFD----PKTDEFVIHSPTLTSSKW 179
>05_07_0063 -
27428056-27428184,27428321-27428460,27428698-27428926,
27429231-27429281,27429411-27429636,27430230-27430300,
27430466-27430585,27430671-27430865,27431088-27431152,
27431232-27431322,27431607-27431707,27431767-27431817,
27432076-27432177,27432406-27432510,27432600-27432663,
27433023-27433151
Length = 622
Score = 26.6 bits (56), Expect = 6.5
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -2
Query: 378 VVGEVLLRCRAGRVVPLHPGMLQLLRVLARGEYFSYLRLQR*IAFTFILVRADL 217
VVG+ L R +V P +LQL R+ EY ++ L R F LVR ++
Sbjct: 54 VVGKDFLP-RGSGIVTRRPLVLQLHRIDGDREYAEFMHLPRKRFTDFALVRKEI 106
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 26.2 bits (55), Expect = 8.6
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 69 DVRVAGLPGFHVA*NVQEIQSAGRCGSA*RQIPSFDE 179
D A PG VA + Q++ SAGR S Q+PS DE
Sbjct: 2749 DAPHATAPG-EVALSEQKLASAGRDSSRAAQLPSSDE 2784
>06_01_0786 -
5881178-5881303,5881523-5881627,5882078-5882169,
5882267-5882336,5882639-5882724,5882916-5883017,
5883375-5883597,5883693-5883758,5883896-5883986,
5884019-5884057,5885401-5885548,5885623-5885715,
5885782-5885886,5886645-5886826,5886912-5887084
Length = 566
Score = 26.2 bits (55), Expect = 8.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 298 DPEELKHAWVEWHNP 342
DP + + AW+EW NP
Sbjct: 202 DPIKRRMAWIEWSNP 216
>02_03_0320 +
17677809-17677929,17678203-17678289,17678657-17678763,
17679903-17679981,17680574-17680754,17681290-17681411,
17681541-17681677
Length = 277
Score = 26.2 bits (55), Expect = 8.6
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 16 QTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRTVSG 192
+ + ELS +EK +E + Y W+DF D T R Q V + +K +L+ G
Sbjct: 200 EPNFELSEEEK---KELQNYTWKDFLDMT-RDTITSKKQRKVGLIRRNKTDSLVGQSDG 254
>02_03_0062 + 14586152-14586461,14586792-14587075,14587807-14588079
Length = 288
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -1
Query: 325 PRHASTPQGLGSWRIFQLSQAPKIDRIYFHSC---TSRSSQWH 206
PR + G G WR Q+++ K +H+ R+ +WH
Sbjct: 96 PRMVISDGGAGEWRKMQIAKLEKWGEKAYHNAKIYKERTKRWH 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.126 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,362,377
Number of Sequences: 37544
Number of extensions: 224560
Number of successful extensions: 526
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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