Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0357
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   4e-04
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   9e-04
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     40   9e-04
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)                39   0.002
SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5)                  33   0.077
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  29   1.3  
SB_38199| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_34131| Best HMM Match : DUF1289 (HMM E-Value=3.7)                   29   1.3  
SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)                  29   1.3  
SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.2  
SB_5544| Best HMM Match : APG9 (HMM E-Value=7e-09)                     28   2.9  
SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22)                  27   3.8  
SB_22012| Best HMM Match : ERO1 (HMM E-Value=0)                        27   3.8  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               27   6.7  
SB_31981| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)               26   8.8  
SB_5052| Best HMM Match : APC_crr (HMM E-Value=1.7)                    26   8.8  
SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)            26   8.8  
SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)                    26   8.8  

>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
 Frame = +1

Query: 7   KSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRTV 186
           K  Q  L  S   + A ++ K +      + T RR  K  ++   A+  D   Q  +  V
Sbjct: 64  KRTQASLTYSAFLEEARKKAKKFDLTKLSNDT-RRQIKMVTE--TASSSDKDVQKTLNDV 120

Query: 187 SG-MESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNPAG 348
            G M+  Y + K+    + SK  LSL+P + +I S S+D E LK  W  W +  G
Sbjct: 121 EGKMDQIYGSGKVID-TDGSK--LSLDPHLYKILSNSRDYERLKFVWKGWRDATG 172


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 39.5 bits (88), Expect = 9e-04
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +1

Query: 172 LMRTVSGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNPAGA 351
           L   ++ M   Y+T K+C     +   +SL+P++  + S S++ +EL  AW  W +    
Sbjct: 252 LQSLITNMTEIYSTGKVCLNITRNNTCMSLDPDLGNLMSRSRNQDELVWAWRGWRDAVAP 311

Query: 352 TAKKNF 369
             +  F
Sbjct: 312 PVRGMF 317


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 39.5 bits (88), Expect = 9e-04
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +1

Query: 172 LMRTVSGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNPAGA 351
           L   ++ M   Y+T K+C     +   +SL+P++  + S S++ +EL  AW  W +    
Sbjct: 536 LQSLITNMTEIYSTGKVCLNITRNNTCMSLDPDLGNLMSRSRNQDELVWAWRGWRDAVAP 595

Query: 352 TAKKNF 369
             +  F
Sbjct: 596 PVRGMF 601


>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
          Length = 663

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 24/90 (26%), Positives = 42/90 (46%)
 Frame = +1

Query: 106 RRMFKKYSQLGVAALPDDKFQALMRTVSGMESNYATAKICSYKNESKCDLSLEPEITEIF 285
           +R    Y    +A    +K     +  S M   Y++AK+ +    +  +LSL P++TE+ 
Sbjct: 96  KRQIGLYKAAFIAPKRLEKRMQYSQRESEMTEIYSSAKVTNPAIGT--NLSLNPQLTELM 153

Query: 286 STSQDPEELKHAWVEWHNPAGATAKKNFTD 375
           + S++  EL  AW +W    G   +  F D
Sbjct: 154 ANSRNSPELLAAWRDWRQVTGPKMRPLFKD 183


>SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5)
          Length = 200

 Score = 33.1 bits (72), Expect = 0.077
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 187 SGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNPAGATAKKN 366
           S M+  Y++ K+     E    LSL P++ +I + S+D E L   W  W +  G   +  
Sbjct: 123 SQMDKIYSSGKVKDANGEM---LSLNPDLYKILAESRDYERLLFVWKGWRDAVGPAIRPL 179

Query: 367 FTDY 378
           +  +
Sbjct: 180 YQQF 183


>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 223 CSYKNESKCDLSLEPEITEIFSTSQD-PEELKHAWVEWHNPAG 348
           CS K+ S CDL  +P+ + +  TSQ+ P+ +   W +     G
Sbjct: 179 CSDKDTSACDLRTKPQSSTVCGTSQECPKWIIGNWSQCSRTCG 221


>SB_38199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 256 SLEPEITEIFSTSQDPEELKHAWVEWHNPAG 348
           SLEP IT I   S+ P +     V+W +P G
Sbjct: 19  SLEPLITNIDRPSKQPSDFGERIVDWPSPTG 49


>SB_34131| Best HMM Match : DUF1289 (HMM E-Value=3.7)
          Length = 235

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +1

Query: 52  AWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRTVSGMESNYATAKIC 225
           AW +T     +D+    L+R+  +++   ++A+ DDK +     +S     YA    C
Sbjct: 59  AWIDTTSSLMRDYVGELLKRLASQHASKWLSAVRDDKMELFCACISPSPPEYARVGTC 116


>SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)
          Length = 472

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +1

Query: 52  AWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALPDDKFQALMRTVSGMESNYATAKIC 225
           AW +T     +D+    L+R+  +++   ++A+ DDK +     +S     YA    C
Sbjct: 296 AWIDTTSSLMRDYVGELLKRLASQHASKWLSAVRDDKMELFCACISPSPPEYARVGTC 353


>SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +1

Query: 121 KYSQLGVAALPDDKFQALMRTVSGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQD 300
           K+++LG  ++ +D  +         ESN    K  +  N ++ D    P+++  F   +D
Sbjct: 586 KHTRLGTFSVVNDDIETFELGQQPRESNDLNFKAQNPNNSAESDTFEMPDLSRSFPLEKD 645

Query: 301 PEELK 315
             ELK
Sbjct: 646 KTELK 650


>SB_5544| Best HMM Match : APG9 (HMM E-Value=7e-09)
          Length = 1288

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 328 PPRHASTPQGLGSWRIFQLSQAP 260
           P  H+  P G   WR + LSQAP
Sbjct: 731 PRDHSDKPHGHSHWRTYILSQAP 753


>SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22)
          Length = 341

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 202 SIPFQTQFSSKLGICRQAEPQRPADCIS 119
           SI  Q   SS+L IC  ++ +RP  C+S
Sbjct: 314 SIELQRSASSRLSICDPSKRRRPCFCLS 341


>SB_22012| Best HMM Match : ERO1 (HMM E-Value=0)
          Length = 400

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 265 APKIDRIYFHSCTSRSSQWHSSIPFQTQFSSKLGICRQAEP 143
           AP  + + F++      ++   + F     SKLG+CR +EP
Sbjct: 252 APYWETMEFYTGEYEEDEYVRKLVFDLLAESKLGLCRNSEP 292


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +1

Query: 178 RTVSGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNPAGATA 357
           RT    ES  A+    + KN    + +  P+IT    T+  PE           P G  A
Sbjct: 33  RTTGPHESTVASGATVASKNTVTPETTSSPDITVESGTTVPPESTTTPGTTVATPEGTAA 92

Query: 358 KKN 366
           K N
Sbjct: 93  KGN 95


>SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 350 APAGLCHSTQACFNSSGSWLVENIS 276
           A  GLCH    C N+ GS+  ++I+
Sbjct: 309 ADDGLCHKGTTCVNTMGSYRCQDIN 333


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 208 ATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWH 336
           AT    S+   + CD  L  +  + F TS+DP     A +E H
Sbjct: 163 ATGGWTSWSRFTPCDRQLCEKYRQRFCTSEDPSSCPGAQIEIH 205


>SB_31981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 25  LELSRQEKAAWEETKMYGWQDFQD 96
           + LS +++AAW       WQ F+D
Sbjct: 205 ISLSAEQRAAWRAAMQPVWQQFED 228


>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
          Length = 1366

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 112 MFKKYSQLGVAALPDDKFQALMRTVSGMES 201
           ++K   QLG ++    + QA+MR +SGM S
Sbjct: 513 VYKALGQLGFSSFRAGQEQAVMRILSGMSS 542


>SB_5052| Best HMM Match : APC_crr (HMM E-Value=1.7)
          Length = 126

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 265 PEITEIFSTSQDPEELKHAWVEWHNPAGA 351
           P +  + S    P+EL+H   +W +  GA
Sbjct: 61  PMLASVTSVHDSPDELQHELGQWESEGGA 89


>SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)
          Length = 1037

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 214  AKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNPAGATAKKNFTDY 378
            +++ S   E + D +LE +  + +   Q   +    W       G+ AK+NFTDY
Sbjct: 933  SRLLSMDREGRHDKALE-KYQQDYERYQQRRQKILDWQAQSRERGSLAKQNFTDY 986


>SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)
          Length = 1007

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +1

Query: 100 TLRRMFKKYSQLGVAALPDDKFQALMRTVSGMESNYATAKICSYKNESKCDLSLEPEITE 279
           ++ R   + S++      DD+  A  RT S    +  T+    YK  +K + S +P+I+ 
Sbjct: 450 SVSRTSSRVSRISTTRAKDDRVSAGSRTSSLSSLSSVTSSHPEYKGSTKLNTS-KPKISG 508

Query: 280 IFSTSQDPEELK 315
             S++Q   ++K
Sbjct: 509 RKSSNQPGAKIK 520


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.126    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,863,516
Number of Sequences: 59808
Number of extensions: 252178
Number of successful extensions: 705
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)