Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0357
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.52 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   0.52 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   0.52 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   1.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   3.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.8  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   4.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   8.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   8.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             20   8.4  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 0.52
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 341 GLCHSTQACFNSSGSWLVENISVISGSKD 255
           GL ++T +C+N   S   +NI V++ ++D
Sbjct: 319 GLANNTLSCWNEHQSLDRQNIDVVARNED 347


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.52
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 217 KICSYKNESKCDLSLEPEITEIFSTS-QDP 303
           KI  Y  E+     + P   EIFSTS +DP
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDP 416


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.52
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 217 KICSYKNESKCDLSLEPEITEIFSTS-QDP 303
           KI  Y  E+     + P   EIFSTS +DP
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDP 416


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 283 IFQLSQAPKIDRIYFHSCTSRSSQWHSSIPF 191
           IF ++ +P  + +Y+   +SRS  + ++ PF
Sbjct: 254 IFGMALSPMTNNLYYSPLSSRSLYYVNTKPF 284


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 323 QACFNSSGSWLVENISV 273
           Q CF   GSW  + I +
Sbjct: 157 QTCFMKFGSWTYDGIQI 173


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 340  GCATPPRHASTPQGLGSWRIFQLSQ 266
            GCA+PP  A++ + + S R  Q  Q
Sbjct: 1750 GCASPPPAATSMKSVSSRRRQQRKQ 1774


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 340  GCATPPRHASTPQGLGSWRIFQLSQ 266
            GCA+PP  A++ + + S R  Q  Q
Sbjct: 1746 GCASPPPAATSMKSVSSRRRQQRKQ 1770


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 283 IFQLSQAPKIDRIYFHSCTSRSSQWHSSIPF 191
           IF ++ +P  + +Y+   TS S  + +  PF
Sbjct: 254 IFGMALSPVTNNLYYSPLTSHSLYYVNMEPF 284


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 312 EACLGGVAQPGRRDS 356
           +A LGG  Q GR+DS
Sbjct: 475 QAQLGGERQNGRKDS 489


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 291 EPRP*GVEACLGGVAQPGR 347
           +P P GVE  +  V QP R
Sbjct: 43  DPLPFGVENTISSVPQPPR 61


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 157 DKFQALMRTVSGMESNYATAKICSYKNESKCDLSL 261
           ++FQ+L   V  ME+   T  +     +   DLSL
Sbjct: 489 EEFQSLNNAVGEMEATNVTNILSMDNTQYNLDLSL 523


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 323 QACFNSSGSWLVENISV 273
           Q CF   GSW  +  +V
Sbjct: 157 QTCFMKFGSWTYDGYTV 173


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 125 YFLNILRNVKSWKSCHPY 72
           YF   +R+   W SC+ Y
Sbjct: 87  YFFMSMRSELPWGSCNNY 104


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 13/59 (22%), Positives = 23/59 (38%)
 Frame = -1

Query: 307 PQGLGSWRIFQLSQAPKIDRIYFHSCTSRSSQWHSSIPFQTQFSSKLGICRQAEPQRPA 131
           P+G+   R        K  R + H   ++ ++ +  +PF    S +    R  E Q  A
Sbjct: 226 PKGINGRRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHLTLSFRDFRDRTTEQQHKA 284


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 13/59 (22%), Positives = 23/59 (38%)
 Frame = -1

Query: 307 PQGLGSWRIFQLSQAPKIDRIYFHSCTSRSSQWHSSIPFQTQFSSKLGICRQAEPQRPA 131
           P+G+   R        K  R + H   ++ ++ +  +PF    S +    R  E Q  A
Sbjct: 221 PKGINGRRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHLTLSFRDFRDRTTEQQHKA 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.126    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,538
Number of Sequences: 438
Number of extensions: 2324
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)