Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0355
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    64   2e-11
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    26   7.0  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    25   9.2  

>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = +3

Query: 663 MNIRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWP 779
           M+IR AR SDL  MQ+CNL  LPENYQ+KYY YH +SWP
Sbjct: 1   MDIRPARISDLTGMQNCNLHNLPENYQLKYYLYHAISWP 39


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = +3

Query: 444 NSMSLVIDSDLHDVDGLD*DSFVPVLGWYIVWKCCLSKFRFVRELLGGMSDT 599
           +SM+L +D   H ++        P+L ++++ + CL K + V  ++G ++ T
Sbjct: 118 DSMTLDVDESEHSLE-----MQFPLLAFHLLKQGCLGKVKIVPIMIGALTST 164


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 579 VVLEQIEIWINSTSKQCTNLEQEQRSLSLNHQHHV 475
           + LEQ++  +N  S +  N+E +  S ++  Q HV
Sbjct: 419 ITLEQMKTELNKFSVRLNNIEAQADSSTMEFQGHV 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,319
Number of Sequences: 5004
Number of extensions: 54462
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)